Co-expression analysis

Gene ID 1613162_at
Gene name hypothetical protein LOC100261444
Homology with ArabidopsisSimilar to At4g26230: 60S ribosomal protein L31 (RPL31B) (HF=3e-20)
Module size 10 genes
NF 0.64
%ile 90.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5273.90.981613162_atCF514736hypothetical protein LOC100261444-3e-20At4g2623060S ribosomal protein L31 (RPL31B)O.I.H.G.S.X.
0.8494.80.991608096_atCB978907hypothetical protein LOC100264515-6e-59At5g3985040S ribosomal protein S9 (RPS9C)O.I.H.G.S.X.
0.7390.80.991610092_atBQ794603hypothetical protein LOC100250286-2e-18At5g1838040S ribosomal protein S16 (RPS16C)O.I.H.G.S.X.
0.7088.60.991613860_s_atCF512506cyc07-6e-38At3g0484040S ribosomal protein S3A (RPS3aA)O.I.H.G.S.X.
0.6384.30.991621022_atBQ794425hypothetical protein LOC100255295-7e-43At3g0208040S ribosomal protein S19 (RPS19A)O.I.H.G.S.X.
0.6384.30.991610560_atBQ797613hypothetical protein LOC100258347-7e-52At3g4737040S ribosomal protein S20 (RPS20B)O.I.H.G.S.X.
0.5980.60.991610193_atCF214569hypothetical protein LOC100242819-1e-53At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.
0.5779.80.991610095_s_atCF516594hypothetical protein LOC100257471-9e-49At5g2390060S ribosomal protein L13 (RPL13D)O.I.H.G.S.X.
0.5375.20.991607915_atCF214306hypothetical protein LOC100246504-4e-50At2g39460RPL23AA (RIBOSOMAL PROTEIN L23AA)O.I.H.G.S.X.
0.4767.70.991614350_atCF517395hypothetical protein LOC100242146-4e-72At4g00100ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.094.2GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.893.4GSM436369Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM287886Green soft berry C22 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM147710Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation39Link to GEO
2.390.7GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.289.9GSM436356Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM287890Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM287883Green soft berry A23 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM147713Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation42Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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