CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1613129_at

Gene name hypothetical protein LOC100266068
Homology with Arabidopsis Similar to At4g17330: ATG2484-1 (HF=2e-13)

Module size 6 genes

NF 0.59

%ile 86.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 84.3 0.99 1613129_at CB970410 hypothetical protein LOC100266068 - 2e-13 At4g17330 ATG2484-1 O.I. H.G. S.X.
0.80 93.6 0.99 1615901_at CF405787 hypothetical protein LOC100248277 - 5e+0 At4g13075 RALFL30 (RALF-LIKE 30) O.I. H.G. S.X.
0.56 79.4 0.99 1614710_at CF404864 - - 1e-1 At1g53625 unknown protein O.I. H.G. S.X.
0.53 75.2 0.99 1611483_at CF207449 hypothetical protein LOC100253154 - 7e+0 Atmg00320 - O.I. H.G. S.X.
0.50 72.7 0.99 1607726_at CB349094 hypothetical protein LOC100262331 - 8e-25 At4g34100 protein binding / zinc ion binding O.I. H.G. S.X.
0.42 60.1 0.99 1617845_at CD800649 hypothetical protein LOC100263968 - 4e-35 At2g38630 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.63	84.3	0.99	1613129_at	CB970410	hypothetical protein LOC100266068	-	2e-13	At4g17330	ATG2484-1	O.I.	H.G.	S.X.
0.80	93.6	0.99	1615901_at	CF405787	hypothetical protein LOC100248277	-	5e+0	At4g13075	RALFL30 (RALF-LIKE 30)	O.I.	H.G.	S.X.
0.56	79.4	0.99	1614710_at	CF404864	-	-	1e-1	At1g53625	unknown protein	O.I.	H.G.	S.X.
0.53	75.2	0.99	1611483_at	CF207449	hypothetical protein LOC100253154	-	7e+0	Atmg00320	-	O.I.	H.G.	S.X.
0.50	72.7	0.99	1607726_at	CB349094	hypothetical protein LOC100262331	-	8e-25	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.42	60.1	0.99	1617845_at	CD800649	hypothetical protein LOC100263968	-	4e-35	At2g38630	-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.71	89.5	0.97	1615094_at	CB972052	hypothetical protein LOC100242117	-	4e-1	At3g05420	ACBP4 (ACYL-COA BINDING PROTEIN 4)	O.I.	H.G.	S.X.
0.67	87.9	0.98	1614103_at	CF515571	hypothetical protein LOC100257061	-	2e-2	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.
0.63	84.3	0.98	1616131_at	CB973358	similar to Os01g0104000	-	1e+0	At1g11470	-	O.I.	H.G.	S.X.
0.60	81.9	0.98	1609052_at	CD712593	hypothetical protein LOC100256185	-	3e+0	At3g28230	-	O.I.	H.G.	S.X.
0.60	81.9	0.99	1608089_at	BQ796412	hypothetical protein LOC100242497	-	8e-9	At3g63080	ATGPX5 (glutathione peroxidase 5)	O.I.	H.G.	S.X.
0.57	79.8	0.98	1614563_at	BQ800083	hypothetical protein LOC100250772	-	1e-10	At1g22280	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.57	79.8	0.99	1615281_at	CD800042	hypothetical protein LOC100241659	-	2e-17	At3g26560	ATP-dependent RNA helicase, putative	O.I.	H.G.	S.X.
0.55	77.3	0.98	1611002_s_at	CB969717	hypothetical protein LOC100246998	-	6e-13	At3g10210	-	O.I.	H.G.	S.X.
0.50	72.7	0.98	1610018_at	CF514810	hypothetical protein LOC100246937	-	4e-10	At1g43640	AtTLP5 (TUBBY LIKE PROTEIN 5)	O.I.	H.G.	S.X.
0.50	72.7	0.98	1615871_at	CB978454	hypothetical protein LOC100249692	-	4e+0	At5g66180	-	O.I.	H.G.	S.X.
0.50	72.7	0.98	1620031_at	BQ798214	-	-	2e-5	At4g28260	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.98	1614665_s_at	BQ799768	similar to Tubby; Cyclin-like F-box	-	5e-16	At1g53320	AtTLP7 (TUBBY LIKE PROTEIN 7)	O.I.	H.G.	S.X.
0.50	72.7	0.98	1616182_at	CB978298	hypothetical protein LOC100242352	-	1e-16	At1g14650	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein	O.I.	H.G.	S.X.
0.50	72.7	0.98	1619145_s_at	CB969125	hypothetical protein LOC100250496	-	6e-36	At2g27050	EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)	O.I.	H.G.	S.X.
0.50	72.7	0.98	1618197_at	BQ797561	hypothetical protein LOC100250454	-	4e-3	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.
0.50	72.7	0.99	1606661_at	CD004606	hypothetical protein LOC100246447	-	2e+0	At5g08050	-	O.I.	H.G.	S.X.
0.48	68.8	0.98	1607202_s_at	CD797631	hypothetical protein LOC100242295	-	2e-65	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.
0.47	67.7	0.97	1616846_at	CF210296	hypothetical protein LOC100241943	-	4e-1	At2g30615	-	O.I.	H.G.	S.X.
0.47	67.7	0.99	1609777_at	CF519086	hypothetical protein LOC100257098	-	5e+0	At5g44973	-	O.I.	H.G.	S.X.
0.46	66.5	0.98	1615632_a_at	CB977610	hypothetical protein LOC100262698	-	3e-13	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.
0.46	66.5	0.99	1613738_at	CB343644	hypothetical protein LOC100265879	-	6e-1	At3g25420	scpl21 (serine carboxypeptidase-like 21)	O.I.	H.G.	S.X.
0.44	64.1	0.97	1617602_at	CF201091.1	-	-	4e-1	At4g15710	unknown protein	O.I.	H.G.	S.X.
0.44	64.1	0.97	1613053_at	CF405082	-	-	2e+0	At5g62740	band 7 family protein	O.I.	H.G.	S.X.
0.44	64.1	0.98	1609694_at	CB343060	similar to SNF2 domain-containing protein, putative, expressed	-	1e-23	At1g08600	ATRX	O.I.	H.G.	S.X.
0.43	61.5	0.96	1617660_at	CB002386	-	-	5e+0	At3g21140	FMN binding	O.I.	H.G.	S.X.
0.40	57.7	0.98	1609109_at	CB922980	hypothetical protein LOC100249946	-	3e-2	At1g05720	selenoprotein family protein	O.I.	H.G.	S.X.
0.40	57.7	0.98	1606481_at	CF403961	hypothetical protein LOC100265434	-	2e-1	At5g30500	galactinol synthase, putative	O.I.	H.G.	S.X.
0.40	57.7	0.98	1621178_at	BQ794612	similar to FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein	-	8e-2	At5g19570	unknown protein	O.I.	H.G.	S.X.
0.38	53.6	0.96	1609344_at	CF209432	hypothetical protein LOC100246539	-	2e-37	At2g41900	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.38	53.6	0.97	1607718_at	CB913863	hypothetical protein LOC100241240	-	7e-14	At3g14180	transcription factor	O.I.	H.G.	S.X.
0.38	53.6	0.99	1609716_at	CA810704	hypothetical protein LOC100265922	-	3e-1	At2g21210	auxin-responsive protein, putative	O.I.	H.G.	S.X.
0.36	50.7	0.98	1615691_at	CF511397	hypothetical protein LOC100251732	-	9e-56	At4g03430	EMB2770 (EMBRYO DEFECTIVE 2770)	O.I.	H.G.	S.X.
0.36	50.7	0.98	1619563_at	CF514348	hypothetical protein LOC100255371	-	6e-3	At5g41770	crooked neck protein, putative / cell cycle protein, putative	O.I.	H.G.	S.X.
0.33	45.7	0.98	1607823_s_at	CF405744	hypothetical protein LOC100263158	-	1e+0	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.32	43.1	0.97	1620359_at	CF514108	hypothetical protein LOC100253942	-	5e+0	At5g38160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.32	43.1	0.97	1608686_at	CD720258	-	-	2e+0	At5g54850	unknown protein	O.I.	H.G.	S.X.
0.31	41.3	0.98	1618380_at	CB981501	hypothetical protein LOC100252230	-	5e-7	At5g64390	HEN4 (HUA ENHANCER 4)	O.I.	H.G.	S.X.
0.31	41.3	0.98	1609837_s_at	BQ793171	hypothetical protein LOC100258413	-	3e-1	At4g35725	unknown protein	O.I.	H.G.	S.X.
0.31	41.3	0.98	1618336_at	CF510728	hypothetical protein LOC100245210	-	1e+0	At2g27510	ATFD3 (ferredoxin 3)	O.I.	H.G.	S.X.
0.31	41.3	0.98	1610802_s_at	CD802327	hypothetical protein LOC100247363	-	2e-5	At4g09070	-	O.I.	H.G.	S.X.
0.31	41.3	0.98	1617581_at	CF514948	-	-	4e+0	At4g07940	unknown protein	O.I.	H.G.	S.X.
0.31	41.3	0.99	1622033_at	CB917346	hypothetical protein LOC100251869	-	1e-25	At3g11130	clathrin heavy chain, putative	O.I.	H.G.	S.X.
0.31	41.3	0.99	1616867_at	CF405655	hypothetical protein LOC100254223	-	2e-17	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.
0.30	39.4	0.98	1609847_at	CB004110	hypothetical protein LOC100256367	-	1e-4	At3g63220	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.
0.30	39.4	0.98	1618553_at	CF209161	similar to protein kinase family protein	-	1e-2	At2g32850	protein kinase family protein	O.I.	H.G.	S.X.
0.29	37.7	0.98	1612643_at	CF512573	hypothetical protein LOC100263481	-	1e-1	At1g17460	TRFL3 (TRF-LIKE 3)	O.I.	H.G.	S.X.
0.29	37.7	0.96	1619640_at	CB340750	-	-	4e+0	At4g01220	-	O.I.	H.G.	S.X.
0.29	37.7	0.96	1617147_at	CF213753	hypothetical protein LOC100243506	-	1e-16	At4g27130	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.
0.29	37.7	0.97	1620243_at	CF512451	hypothetical protein LOC100245436	-	1e+0	At3g05940	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.98	1621268_at	CB347163	hypothetical protein LOC100265522	-	2e-5	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 94.2 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM147737 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 66
2.5 91.9 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
2.4 91.3 GSM147718 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 47
2.2 89.9 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2 89.9 GSM287871 Green hard berry C4 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM147712 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 41
2.1 89.1 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
1.9 87.2 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.0	94.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
2.5	91.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.4	91.3	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
2.2	89.9	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
2.1	89.1	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
1.9	87.2	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

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Gene ID	1613129_at
Gene name	hypothetical protein LOC100266068
Homology with Arabidopsis	Similar to At4g17330: ATG2484-1 (HF=2e-13)
Module size	6 genes
NF	0.59
%ile	86.0

Co-expression analysis

Gene ID 1613129_at Gene name hypothetical protein LOC100266068 Homology with ArabidopsisSimilar to At4g17330: ATG2484-1 (HF=2e-13) Module size 6 genes NF 0.59 %ile 86.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1613129_at

Gene name hypothetical protein LOC100266068
Homology with Arabidopsis Similar to At4g17330: ATG2484-1 (HF=2e-13)

Module size 6 genes

NF 0.59

%ile 86.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays