Co-expression analysis

Gene ID	1613129_at
Gene name	hypothetical protein LOC100266068
Homology with Arabidopsis	Similar to At4g17330: ATG2484-1 (HF=2e-13)
Module size	6 genes
NF	0.59
%ile	86.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.99	1613129_at	CB970410	hypothetical protein LOC100266068	-	2e-13	At4g17330	ATG2484-1	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1615901_at	CF405787	hypothetical protein LOC100248277	-	5e+0	At4g13075	RALFL30 (RALF-LIKE 30)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.99	1614710_at	CF404864	-	-	1e-1	At1g53625	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.99	1611483_at	CF207449	hypothetical protein LOC100253154	-	7e+0	Atmg00320	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1607726_at	CB349094	hypothetical protein LOC100262331	-	8e-25	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.99	1617845_at	CD800649	hypothetical protein LOC100263968	-	4e-35	At2g38630	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
2.5	91.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.4	91.3	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
2.2	89.9	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
2.1	89.1	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
1.9	87.2	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.23738.1.S1_s_at, orthologous to the query gene, 1613129_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	PtpAffx.23738.1.S1_s_at	At4g17330	hypothetical protein	-	3e-2	At5g61890	AP2 domain-containing transcription factor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.878.1.S1_at	At4g17330	hypothetical protein	-	2e-27	At3g61710	autophagy protein Apg6 family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.44341.1.S1_at	At4g17330	hypothetical protein	-	1e-7	At4g34370	ARI1 (ARIADNE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.4479.1.S1_at	At4g17330	hypothetical protein	-	3e-14	At3g05090	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.5515.1.A1_s_at	At4g17330	hypothetical protein	-	3e+0	At2g05440	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.120060.1.S1_at	At4g17330	hypothetical protein	-	3e-3	At4g16310	LDL3 (LSD1-LIKE3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.210561.1.S1_at	At4g17330	hypothetical protein	-	4e-42	At3g47990	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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