Co-expression analysis

Gene ID	1613113_at
Gene name	phenylalanine ammonia-lyase
Homology with Arabidopsis	Similar to At1g57850: Toll-Interleukin-Resistance (TIR) domain-containing protein (HF=1e+0)
Module size	6 genes
NF	0.04
%ile	9.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	0.92	1613113_at	CK136925.1	phenylalanine ammonia-lyase	-	1e+0	At1g57850	Toll-Interleukin-Resistance (TIR) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.93	1618019_at	CF204750.1	-	-	1e+0	At1g66580	60S ribosomal protein L10 (RPL10C)	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.93	1607223_at	BQ796376	hypothetical protein LOC100251280	-	4e-14	At5g21105	L-ascorbate oxidase/ copper ion binding / oxidoreductase	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.93	1613182_at	CB982869	hypothetical protein LOC100266622	-	5e-18	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.92	1620052_x_at	CF205391.1	hypothetical protein LOC100250566	-	3e-4	At1g19730	ATTRX4	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.93	1621302_at	CF609302	-	-	5e-5	At1g17210	zinc ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.9	93.8	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.9	93.8	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.5	91.9	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.5	91.9	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.4	91.3	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.4	91.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage