CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1613112_at

Gene name
Homology with Arabidopsis Similar to At3g56140: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.08

%ile 15.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.92 1613112_at CK138195.1 - - 2e+0 At3g56140 unknown protein O.I. H.G. S.X.
0.23 27.5 0.97 1609313_at CF403611 similar to 2-oxo acid dehydrogenase, lipoyl-binding site - 6e-2 At4g22320 unknown protein O.I. H.G. S.X.
0.11 11.3 0.96 1614949_x_at CF202459.1 - - 3e-3 At1g01100 60S acidic ribosomal protein P1 (RPP1A) O.I. H.G. S.X.
0.09 9.4 0.97 1607928_at CF201793.1 - - 5e-3 At4g08230 glycine-rich protein O.I. H.G. S.X.
0.03 4.2 0.97 1614869_at CF208077 hypothetical protein LOC100251847 - 1e-12 At1g50500 HIT1 (HEAT-INTOLERANT 1) O.I. H.G. S.X.
0.03 4.2 0.97 1610845_at CF208629 hypothetical protein LOC100245365 - 2e+0 At1g68030 PHD finger protein-related O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.95	1607317_at	CB975740	-	-	3e-10	At1g54690	GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)	O.I.	H.G.	S.X.
0.46	66.5	0.95	1617934_at	BM437104	-	-	1e-76	At2g34590	transketolase family protein	O.I.	H.G.	S.X.
0.44	64.1	0.96	1616747_at	CF205411.1	-	-	1e-15	At4g09012	-	O.I.	H.G.	S.X.
0.40	57.7	0.94	1609788_at	CD719693	-	-	1e+0	At1g08380	PSAO (photosystem I subunit O)	O.I.	H.G.	S.X.
0.40	57.7	0.95	1622228_at	CF568837	-	-	4e-68	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	O.I.	H.G.	S.X.
0.36	50.7	0.95	1612614_at	CF607041	hypothetical protein LOC100255252	-	3e-4	At1g08460	HDA08	O.I.	H.G.	S.X.
0.33	45.7	0.94	1608977_at	CB007952	-	-	1e-35	At5g48370	thioesterase family protein	O.I.	H.G.	S.X.
0.33	45.7	0.94	1607830_at	CF568994	-	-	2e-72	At3g22110	PAC1	O.I.	H.G.	S.X.
0.33	45.7	0.96	1617933_at	CF513341	-	-	4e+0	At3g22961	-	O.I.	H.G.	S.X.
0.32	43.1	0.97	1621865_at	CD715514	-	-	2e+0	At3g52770	ZPR3 (LITTLE ZIPPER 3)	O.I.	H.G.	S.X.
0.31	41.3	0.98	1614871_s_at	CF404051	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.
0.29	37.7	0.98	1612817_at	CB002820	hypothetical protein LOC100267132	-	3e-1	At3g62330	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.
0.27	34.0	0.94	1608589_at	CB003279	-	-	4e-19	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.
0.26	32.0	0.95	1606923_s_at	CB344818	hypothetical protein LOC100255239	-	7e-6	At1g64850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.25	30.5	0.95	1619188_at	CF204375.1	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.
0.25	30.5	0.98	1607580_s_at	AF501624.1	similar to histone H3 /// similar to histone H3	-	6e-87	At4g40040	histone H3.2	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.4 98.3 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.3 95.2 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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