CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1613112_at

Gene name
Homology with Arabidopsis Similar to At3g56140: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.08

%ile 15.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.92 1613112_at CK138195.1 - - 2e+0 At3g56140 unknown protein O.I. H.G. S.X.
0.23 27.5 0.97 1609313_at CF403611 similar to 2-oxo acid dehydrogenase, lipoyl-binding site - 6e-2 At4g22320 unknown protein O.I. H.G. S.X.
0.11 11.3 0.96 1614949_x_at CF202459.1 - - 3e-3 At1g01100 60S acidic ribosomal protein P1 (RPP1A) O.I. H.G. S.X.
0.09 9.4 0.97 1607928_at CF201793.1 - - 5e-3 At4g08230 glycine-rich protein O.I. H.G. S.X.
0.03 4.2 0.97 1614869_at CF208077 hypothetical protein LOC100251847 - 1e-12 At1g50500 HIT1 (HEAT-INTOLERANT 1) O.I. H.G. S.X.
0.03 4.2 0.97 1610845_at CF208629 hypothetical protein LOC100245365 - 2e+0 At1g68030 PHD finger protein-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.4 98.3 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.3 95.2 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.8337.1.S1_at, orthologous to the query gene, 1613112_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 87.2 TaAffx.8337.1.S1_at At3g56140 - - 6e-1 At3g03500 tatD-related deoxyribonuclease family protein O.I. H.G. S.X.
0.43 62.2 TaAffx.72471.1.S1_at At3g56140 - - 1e+0 At2g27940 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.43 62.2 Ta.25810.1.A1_at At3g56140 - - 1e+0 At5g10310 unknown protein O.I. H.G. S.X.
0.30 40.9 Ta.17218.1.S1_at At3g56140 - - 2e+1 At5g08260 scpl35 (serine carboxypeptidase-like 35) O.I. H.G. S.X.
0.29 39.2 TaAffx.106563.2.S1_at At3g56140 - - 1e+1 At4g19100 unknown protein O.I. H.G. S.X.
0.25 32.1 TaAffx.78823.1.S1_at At3g56140 - - 4e+0 At5g26840 unknown protein O.I. H.G. S.X.
0.21 25.5 Ta.6596.3.S1_at At3g56140 - - 2e+1 At4g23496 SP1L5 (SPIRAL1-LIKE5) O.I. H.G. S.X.
0.21 25.5 TaAffx.27185.1.S1_at At3g56140 - - 1e+0 At1g68540 oxidoreductase family protein O.I. H.G. S.X.
0.20 24.0 TaAffx.52986.1.S1_at At3g56140 - - 1e+1 At3g44950 glycine-rich protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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