Co-expression analysis

Gene ID	1613112_at
Gene name
Homology with Arabidopsis	Similar to At3g56140: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.08
%ile	15.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.92	1613112_at	CK138195.1	-	-	2e+0	At3g56140	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1609313_at	CF403611	similar to 2-oxo acid dehydrogenase, lipoyl-binding site	-	6e-2	At4g22320	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.96	1614949_x_at	CF202459.1	-	-	3e-3	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.97	1607928_at	CF201793.1	-	-	5e-3	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.97	1614869_at	CF208077	hypothetical protein LOC100251847	-	1e-12	At1g50500	HIT1 (HEAT-INTOLERANT 1)	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.97	1610845_at	CF208629	hypothetical protein LOC100245365	-	2e+0	At1g68030	PHD finger protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	98.3	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the barley gene, HZ54B19r_at, orthologous to the query gene, 1613112_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	HZ54B19r_at	At3g56140	-	-	6e-20	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig10681_at	At3g56140	-	-	1e-1	At3g19480	D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	HW07J16u_at	At3g56140	-	-	2e-1	At5g39645	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig6442_at	At3g56140	-	-	2e-1	At2g38920	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig19560_at	At3g56140	-	-	3e-1	At2g47510	FUM1 (FUMARASE 1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig23664_at	At3g56140	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig25667_x_at	At3g56140	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	HC113E08_SK_at	At3g56140	-	-	7e-2	At5g50490	NF-YC5 (NUCLEAR FACTOR Y, SUBUNIT C5)	O.I.	H.G.	S.X.	Please select
0.11	9.4	HS05N06r_at	At3g56140	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.10	8.4	HV_CEa0012K03r2_x_at	At3g56140	-	-	3e+0	At2g07215	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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