CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1613112_at

Gene name
Homology with Arabidopsis Similar to At3g56140: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.08

%ile 15.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.92 1613112_at CK138195.1 - - 2e+0 At3g56140 unknown protein O.I. H.G. S.X.
0.23 27.5 0.97 1609313_at CF403611 similar to 2-oxo acid dehydrogenase, lipoyl-binding site - 6e-2 At4g22320 unknown protein O.I. H.G. S.X.
0.11 11.3 0.96 1614949_x_at CF202459.1 - - 3e-3 At1g01100 60S acidic ribosomal protein P1 (RPP1A) O.I. H.G. S.X.
0.09 9.4 0.97 1607928_at CF201793.1 - - 5e-3 At4g08230 glycine-rich protein O.I. H.G. S.X.
0.03 4.2 0.97 1614869_at CF208077 hypothetical protein LOC100251847 - 1e-12 At1g50500 HIT1 (HEAT-INTOLERANT 1) O.I. H.G. S.X.
0.03 4.2 0.97 1610845_at CF208629 hypothetical protein LOC100245365 - 2e+0 At1g68030 PHD finger protein-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.4 98.3 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.3 95.2 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g56140, orthologous to the query gene, 1613112_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g56140 824780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFV O.I. H.G. S.X.
0.44 57.2 At3g11560 820329 unknown protein F:unknown;P:unknown;C:chloroplast, chloroplast envelope;P O.I. H.G. S.X.
0.33 38.1 At4g33630 829504 EX1 (EXECUTER1) F:unknown;P:response to singlet oxygen;C:thylakoid membrane;MOPFBV O.I. H.G. S.X.
0.25 22.6 At1g07110 837221 F2KP (FRUCTOSE-2,6-BISPHOSPHATASE) Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase. O.I. H.G. S.X.
0.09 2.8 At5g50920 835165 CLPC1 Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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