Co-expression analysis

Gene ID	1613104_at
Gene name	hypothetical protein LOC100257801
Homology with Arabidopsis	Similar to At5g63510: GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1) (HF=6e-35)
Module size	6 genes
NF	0.60
%ile	86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.99	1613104_at	CB006723	hypothetical protein LOC100257801	-	6e-35	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1607687_s_at	BQ792489	hypothetical protein LOC100241478	-	3e-42	At5g26667	PYR6	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.99	1612623_at	CA817679	hypothetical protein LOC100247134	-	1e-4	At5g47890	NADH-ubiquinone oxidoreductase B8 subunit, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1619947_at	BQ794365	hypothetical protein LOC100266603	-	5e-6	At3g05280	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1608128_at	CB342130	hypothetical protein LOC100263010	-	5e-47	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1608673_at	CF512304	hypothetical protein LOC100250724	-	4e-147	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
1.7	84.7	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage