Co-expression analysis

Gene ID	1613097_at
Gene name	hypothetical protein LOC100241460
Homology with Arabidopsis	Similar to At3g61260: DNA-binding family protein / remorin family protein (HF=2e-18)
Module size	6 genes
NF	0.02
%ile	5.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.91	1613097_at	BQ795148	hypothetical protein LOC100241460	-	2e-18	At3g61260	DNA-binding family protein / remorin family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.91	1607233_at	CF414238	hypothetical protein LOC100245593	-	5e-3	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.92	1617242_at	CF211993	hypothetical protein LOC100255381	-	2e-4	At1g09575	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.91	1619400_at	CF603647	hypothetical LOC100264164	-	7e-2	At1g53210	sodium/calcium exchanger family protein / calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.92	1612004_at	BQ797336	similar to UBA-like; HSC20, C-terminal oligomerisation	-	2e+0	At1g51730	RWD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.91	1614681_at	CF206571.1	-	-	2e-24	At1g08200	AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.9	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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