Co-expression analysis

Gene ID	1612996_at
Gene name
Homology with Arabidopsis	Similar to At4g11600: ATGPX6 (GLUTATHIONE PEROXIDASE 6) (HF=5e-2)
Module size	14 genes
NF	0.12
%ile	19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.87	1612996_at	CD798919	-	-	5e-2	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.90	1617304_at	CF404560	hypothetical protein LOC100245676	-	1e+0	At3g11580	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1617599_at	CF373544	hypothetical protein LOC100265390	-	2e-42	At4g23400	PIP1	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.89	1619328_s_at	CF514383	-	-	3e-1	At5g44560	VPS2.2	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.94	1620140_at	CF208989	hypothetical protein LOC100258559	-	1e-10	At1g60390	BURP domain-containing protein / polygalacturonase, putative	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.91	1613692_at	CF205305.1	-	-	2e-2	At5g37770	TCH2 (TOUCH 2)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.94	1611638_at	CB971322	-	-	3e+0	At5g26673	-	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.91	1611815_at	CF202243.1	-	-	2e-6	At3g47590	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.93	1616638_at	CF369040	hypothetical protein LOC100267897	-	4e+0	At5g26690	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.92	1615966_at	CF215207	hypothetical protein LOC100247135	-	2e-4	At3g58620	TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4)	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.94	1608204_at	CF209964	hypothetical protein LOC100266265	-	4e-94	At4g28950	ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.94	1616780_at	CF415162	hypothetical protein LOC100265405	-	2e-8	At5g60210	-	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.91	1612466_at	CF373473	hypothetical protein LOC100253496	-	2e-2	At5g37770	TCH2 (TOUCH 2)	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.90	1622843_s_at	CF212102	-	-	6e-2	At1g11785	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.8	96.4	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.9	87.2	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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