Co-expression analysis

Gene ID 1612983_at
Gene name hypothetical protein LOC100249094
Homology with ArabidopsisSimilar to At3g15790: MBD11 (HF=1e-1)
Module size 6 genes
NF 0.21
%ile 30.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.90.971612983_atCB344129hypothetical protein LOC100249094-1e-1At3g15790MBD11O.I.H.G.S.X.
0.3345.70.971616264_atCB006693hypothetical protein LOC100253432-9e-2At3g57880C2 domain-containing proteinO.I.H.G.S.X.
0.2225.60.971608307_atCF209143hypothetical protein LOC100247674-2e-1At2g33300-O.I.H.G.S.X.
0.2124.00.971618930_atCF206622.1hypothetical protein LOC100254102-2e+0At4g24660ATHB22 (HOMEOBOX PROTEIN 22)O.I.H.G.S.X.
0.1920.90.971611698_atCA812037hypothetical protein LOC100263780-2e+0At5g65360histone H3O.I.H.G.S.X.
0.1212.10.971617131_atCF511594hypothetical protein LOC100242326-2e+0At1g54095unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5779.80.931612864_atCD713095--1e+0At4g10925F-box family proteinO.I.H.G.S.X.
0.4666.50.941611984_atCB918447--9e-2At3g03590SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.4361.50.951608309_atCB002341--9e-15At3g27540glycosyl transferase family 17 proteinO.I.H.G.S.X.
0.4361.50.951610985_atCF404463--4e+0At2g13510unknown proteinO.I.H.G.S.X.
0.4057.70.941613990_atCD013683--1e-13At1g12470Pep3/Vps18/deep orange family proteinO.I.H.G.S.X.
0.4057.70.951618712_atCB003306--3e-1At4g21330DYT1 (DYSFUNCTIONAL TAPETUM 1)O.I.H.G.S.X.
0.4057.70.971616046_atCD012880--9e-6At1g08280glycosyl transferase family 29 protein / sialyltransferase family proteinO.I.H.G.S.X.
0.4057.70.971622111_atCB970952hypothetical protein LOC100242512-1e-3At3g04470-O.I.H.G.S.X.
0.3853.60.961606871_atCB970216hypothetical protein LOC100265666-1e-3At4g11090unknown proteinO.I.H.G.S.X.
0.3650.70.941618950_atCD718527--9e-2At2g01350QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE)O.I.H.G.S.X.
0.3548.50.941613967_atCF515735--4e+0At5g08139zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3345.70.941607040_atCF568797--5e-24At1g54610protein kinase family proteinO.I.H.G.S.X.
0.3345.70.941608135_atCF206119.1--1e+0At2g47650UXS4 (UDP-XYLOSE SYNTHASE 4)O.I.H.G.S.X.
0.3243.10.941619050_atCB977861hypothetical protein LOC100249358-2e+0At5g53280PDV1 (PLASTID DIVISION1)O.I.H.G.S.X.
0.3243.10.941613232_atCF516759hypothetical LOC100244581-1e+0At1g15710prephenate dehydrogenase family proteinO.I.H.G.S.X.
0.3243.10.961619842_s_atBQ793715hypothetical protein LOC100244132-1e+0At5g08220unknown proteinO.I.H.G.S.X.
0.3243.10.961616071_atCB978649hypothetical protein LOC100259260-5e-58At3g18480AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)O.I.H.G.S.X.
0.3141.30.931614154_atCF568802--7e-8At1g72440EDA25 (embryo sac development arrest 25)O.I.H.G.S.X.
0.2937.70.941613010_atCF403543--4e+0At4g21890unknown proteinO.I.H.G.S.X.
0.2937.70.961619674_atCD715040--3e-1At5g40500unknown proteinO.I.H.G.S.X.
0.2937.70.961621202_atBQ792918hypothetical protein LOC100267221-2e-11At3g54390transcription factorO.I.H.G.S.X.
0.2937.70.971610599_atCF211001hypothetical protein LOC100250338-7e+0At5g16790-O.I.H.G.S.X.
0.2734.00.941606966_atCD801296hypothetical protein LOC100254417-4e+0At5g59990-O.I.H.G.S.X.
0.2734.00.941615204_atCF371804--1e+0At3g21580cobalt ion transmembrane transporterO.I.H.G.S.X.
0.2734.00.961616416_atCB349840hypothetical protein LOC100251243-7e+0At3g43740leucine-rich repeat family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.9GSM436422V. riparia (VR, PI588259) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
4.096.7GSM436424V. riparia (VR, PI588259) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
4.096.7GSM436425V. riparia (VR, PI588259) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.996.6GSM436426V. riparia (VR, PI588259) SD, 13h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.696.0GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.595.7GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.495.5GSM436408V. riparia (VR, PI588259) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.194.6GSM436351Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.194.6GSM436376Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.993.8GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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