Co-expression analysis

Gene ID 1612983_at
Gene name hypothetical protein LOC100249094
Homology with ArabidopsisSimilar to At3g15790: MBD11 (HF=1e-1)
Module size 6 genes
NF 0.21
%ile 30.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.90.971612983_atCB344129hypothetical protein LOC100249094-1e-1At3g15790MBD11O.I.H.G.S.X.
0.3345.70.971616264_atCB006693hypothetical protein LOC100253432-9e-2At3g57880C2 domain-containing proteinO.I.H.G.S.X.
0.2225.60.971608307_atCF209143hypothetical protein LOC100247674-2e-1At2g33300-O.I.H.G.S.X.
0.2124.00.971618930_atCF206622.1hypothetical protein LOC100254102-2e+0At4g24660ATHB22 (HOMEOBOX PROTEIN 22)O.I.H.G.S.X.
0.1920.90.971611698_atCA812037hypothetical protein LOC100263780-2e+0At5g65360histone H3O.I.H.G.S.X.
0.1212.10.971617131_atCF511594hypothetical protein LOC100242326-2e+0At1g54095unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.9GSM436422V. riparia (VR, PI588259) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
4.096.7GSM436424V. riparia (VR, PI588259) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
4.096.7GSM436425V. riparia (VR, PI588259) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.996.6GSM436426V. riparia (VR, PI588259) SD, 13h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.696.0GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.595.7GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.495.5GSM436408V. riparia (VR, PI588259) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.194.6GSM436351Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.194.6GSM436376Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.993.8GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1158.1.S1_at, orthologous to the query gene, 1612983_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0ZmAffx.1158.1.S1_atAt3g15790--3e+0At5g37475translation initiation factor-relatedO.I.H.G.S.X.
0.2928.1Zm.12539.1.A1_atAt3g15790--1e+0At5g64460-O.I.H.G.S.X.
0.2521.3Zm.3816.1.S1_atAt3g15790BURP domain containing protein-5e+0At2g11810MGDCO.I.H.G.S.X.
0.2318.6Zm.4966.1.A1_atAt3g15790hypothetical protein LOC100278743-5e+0At5g46860VAM3O.I.H.G.S.X.
0.1710.6Zm.1364.1.A1_atAt3g15790structural constituent of ribosome-6e-3At5g27820ribosomal protein L18 family proteinO.I.H.G.S.X.
0.136.8Zm.13253.1.S1_atAt3g15790--1e-14At4g08920CRY1 (CRYPTOCHROME 1)O.I.H.G.S.X.
0.136.8Zm.4652.1.A1_atAt3g15790hypothetical protein LOC100192057-3e-10At2g36010E2F3 (E2F TRANSCRIPTION FACTOR 3)O.I.H.G.S.X.
0.136.8Zm.18383.1.A1_atAt3g15790delta(14)-sterol reductase-4e-18At3g52940FK (FACKEL)O.I.H.G.S.X.
0.125.9Zm.16804.1.S1_atAt3g1579050S ribosomal protein L17-2e-6At5g09770ribosomal protein L17 family proteinO.I.H.G.S.X.
0.104.6Zm.3132.1.S1_a_atAt3g15790--1e-10At5g16040regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.094.0Zm.69.1.A1_atAt3g15790--4e-4At1g54580ACP2 (ACYL CARRIER PROTEIN 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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