Co-expression analysis

Gene ID	1612983_at
Gene name	hypothetical protein LOC100249094
Homology with Arabidopsis	Similar to At3g15790: MBD11 (HF=1e-1)
Module size	6 genes
NF	0.21
%ile	30.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.97	1612983_at	CB344129	hypothetical protein LOC100249094	-	1e-1	At3g15790	MBD11	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1616264_at	CB006693	hypothetical protein LOC100253432	-	9e-2	At3g57880	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1608307_at	CF209143	hypothetical protein LOC100247674	-	2e-1	At2g33300	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1618930_at	CF206622.1	hypothetical protein LOC100254102	-	2e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1611698_at	CA812037	hypothetical protein LOC100263780	-	2e+0	At5g65360	histone H3	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.97	1617131_at	CF511594	hypothetical protein LOC100242326	-	2e+0	At1g54095	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.9	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, Gma.6951.1.S1_at, orthologous to the query gene, 1612983_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.2	Gma.6951.1.S1_at	At3g15790	-	-	3e-12	At1g15340	MBD10	O.I.	H.G.	S.X.	Please select
0.85	92.8	Gma.15752.1.S1_at	At3g15790	-	-	4e-69	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.60	80.7	Gma.1526.1.S1_s_at	At3g15790	-	-	2e-1	At4g22490	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.12446.1.A1_at	At3g15790	-	-	1e-77	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.6102.2.S1_at	At3g15790	-	-	8e-20	At2g19520	FVE	O.I.	H.G.	S.X.	Please select
0.53	74.2	GmaAffx.52672.1.S1_at	At3g15790	-	-	5e-2	At5g02100	UNE18 (UNFERTILIZED EMBRYO SAC 18)	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.28382.1.S1_at	At3g15790	-	-	7e+0	At5g66970	GTP binding	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.47099.1.A1_at	At3g15790	-	-	3e-1	At2g19820	LBD9 (LOB DOMAIN-CONTAINING PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.48	67.7	GmaAffx.11185.2.A1_at	At3g15790	-	-	1e+1	At5g46650	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.15513.3.S1_x_at	At3g15790	-	-	1e+0	At5g64020	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.39034.1.S1_at	At3g15790	-	-	3e-1	At1g71740	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.1975.3.S1_at	At3g15790	-	-	4e-29	At5g59910	HTB4	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.7369.1.S1_s_at	At3g15790	-	-	3e-26	At3g45980	HTB9	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.13819.1.S1_at	At3g15790	-	-	3e-1	At2g28725	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.11070.2.S1_s_at	At3g15790	-	-	7e-27	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.15760.1.S1_at	At3g15790	-	-	4e-50	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.4467.1.A1_at	At3g15790	-	-	4e+0	At3g49645	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.72797.2.S1_at	At3g15790	-	-	4e+0	At4g35785	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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