Co-expression analysis

Gene ID	1612965_at
Gene name	hypothetical protein LOC100265776
Homology with Arabidopsis	Similar to At4g21585: ENDO4 (endonuclease 4) (HF=3e-19)
Module size	10 genes
NF	0.48
%ile	71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.98	1612965_at	CF518997	hypothetical protein LOC100265776	-	3e-19	At4g21585	ENDO4 (endonuclease 4)	O.I.	H.G.	S.X.	Please select
0.74	91.0	0.98	1622362_at	CD802017	hypothetical protein LOC100254265	-	6e-34	At2g25760	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1607908_at	CF372696	hypothetical protein LOC100253804	-	4e-3	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.98	1621842_at	CB968661	hypothetical protein LOC100256561	-	3e-33	At3g02420	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1622541_at	CB342787	hypothetical protein LOC100258249	-	4e-35	At5g12190	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1610174_at	CF404219	hypothetical protein LOC100261536	-	1e+0	At1g10590	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1622823_at	BQ797926	hypothetical LOC100261783	-	5e-3	At2g20230	-	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1611617_at	CF373170	hypothetical protein LOC100261039	-	3e-1	At4g12150	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1613230_at	CB343417	hypothetical protein LOC100250421	-	1e+0	At1g47820	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.98	1617753_at	BQ799134	hypothetical protein LOC100249945	-	3e-1	At4g12380	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage