Co-expression analysis

Gene ID 1612959_at
Gene name
Homology with ArabidopsisSimilar to At4g27300: S-locus protein kinase, putative (HF=2e-3)
Module size 6 genes
NF 0.26
%ile 36.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6384.30.921612959_atCB339907--2e-3At4g27300S-locus protein kinase, putativeO.I.H.G.S.X.
0.4464.10.941611689_atCB980747hypothetical protein LOC100258557-8e-39At3g05870APC11O.I.H.G.S.X.
0.3650.70.961612971_x_atBQ793379metallothionein-like protein-like-6e+0At4g16520ATG8F (autophagy 8f)O.I.H.G.S.X.
0.2734.00.951610539_x_atCF205566.1--5e+0At4g16520ATG8F (autophagy 8f)O.I.H.G.S.X.
0.1718.20.931610666_atCF518956hypothetical protein LOC100259734-2e-8At5g49890CLC-C (CHLORIDE CHANNEL C)O.I.H.G.S.X.
0.099.40.941611715_atCF210907hypothetical protein LOC100251903-9e-14At3g10940protein phosphatase-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.899.3GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
6.298.8GSM436428V. riparia (VR, PI588259) SD, 13h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
5.798.5GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.595.7GSM436424V. riparia (VR, PI588259) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM436425V. riparia (VR, PI588259) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM287901Red soft berry C16 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM436426V. riparia (VR, PI588259) SD, 13h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM287899Red soft berry C13 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM287896Pink soft berry C27 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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