Co-expression analysis

Gene ID	1612949_at
Gene name
Homology with Arabidopsis	Similar to At5g09680: cytochrome b5 domain-containing protein (HF=7e+0)
Module size	14 genes
NF	0.30
%ile	42.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.2	0.91	1612949_at	CF513780	-	-	7e+0	At5g09680	cytochrome b5 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1619332_at	CF202464.1	hypothetical protein LOC100257476	-	1e+0	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1613609_at	CF211763	-	-	1e+0	At1g11230	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1620479_at	CD716240	-	-	2e-13	At2g29210	splicing factor PWI domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.96	1615501_at	CF517672	-	-	4e+0	At3g11660	NHL1	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1620032_at	CF514096	-	-	4e+0	At5g04347	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.94	1619937_s_at	CB973939	hypothetical protein LOC100248009	-	2e+0	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1617335_at	CF207178	-	-	4e-1	At2g18410	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.93	1622852_at	CB982747	-	-	4e+0	At5g06790	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.96	1619675_at	CB970205	-	-	5e-18	At5g16715	EMB2247 (embryo defective 2247)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.96	1616040_at	CF513277	-	-	6e+0	At1g57850	Toll-Interleukin-Resistance (TIR) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1620646_at	CF405313	hypothetical protein LOC100267710	-	1e-3	At2g18465	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1612423_at	CF214059	hypothetical protein LOC100241344	-	1e-11	At5g22770	alpha-ADR (alpha-adaptin)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.95	1607508_at	CF207972	hypothetical protein LOC100244517	-	5e-1	At1g13400	NUB (NUBBIN)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
2.0	88.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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