Co-expression analysis

Gene ID 1612920_at
Gene name
Homology with ArabidopsisSimilar to At5g56060: ATP binding / nucleotide binding / phenylalanine-tRNA ligase (HF=1e+0)
Module size 25 genes
NF 0.36
%ile 52.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7491.00.831612920_atCF207623--1e+0At5g56060ATP binding / nucleotide binding / phenylalanine-tRNA ligaseO.I.H.G.S.X.
0.6081.90.921612793_atCB344029hypothetical protein LOC100261593-3e-5At3g54826-O.I.H.G.S.X.
0.5375.20.921614821_atCF216072hypothetical protein LOC100254178-2e-43At5g49940NFU2 (NIFU-LIKE PROTEIN 2)O.I.H.G.S.X.
0.5273.90.941612330_atCF372664hypothetical protein LOC100242653-2e-8At1g71750phosphoribosyltransferase family proteinO.I.H.G.S.X.
0.4868.80.931609135_atCF207623--1e+0At5g56060ATP binding / nucleotide binding / phenylalanine-tRNA ligaseO.I.H.G.S.X.
0.4767.70.921617466_atCB977275hypothetical protein LOC100265578-2e-6At1g08630THA1 (Threonine Aldolase 1)O.I.H.G.S.X.
0.4464.10.931616327_atCF211314hypothetical protein LOC100250497-1e+0At1g15330CBS domain-containing proteinO.I.H.G.S.X.
0.4464.10.951608970_s_atCF206450.1--7e-1At4g02810unknown proteinO.I.H.G.S.X.
0.4158.70.921615486_atCF415476hypothetical protein LOC100245706-7e-3At5g15410DND1 (DEFENSE NO DEATH 1)O.I.H.G.S.X.
0.4158.70.911608361_atCF517494hypothetical protein LOC100264929-3e-18At3g26580-O.I.H.G.S.X.
0.4057.70.941618259_atBM436271hypothetical LOC100245758-3e-32At5g65780ATBCAT-5O.I.H.G.S.X.
0.3751.70.911616294_s_atCD802397hypothetical LOC100256580-4e-5At4g25434ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)O.I.H.G.S.X.
0.3650.70.931621838_atCD012562hypothetical protein LOC100244363-2e+0At5g23530AtCXE18 (Arabidopsis thaliana carboxyesterase 18)O.I.H.G.S.X.
0.3548.50.911621853_atCA809007hypothetical protein LOC100262402-1e+0At1g77520O-methyltransferase family 2 proteinO.I.H.G.S.X.
0.3243.10.911615033_x_atCF202132.1--8e-1At2g14850unknown proteinO.I.H.G.S.X.
0.3141.30.921615832_atBQ792735hypothetical protein LOC100242360-1e-10At2g24860chaperone protein dnaJ-relatedO.I.H.G.S.X.
0.3039.40.931615915_atCF518741hypothetical protein LOC100267889-4e+0At2g24880self-incompatibility protein-relatedO.I.H.G.S.X.
0.2937.70.921611013_atCF518927hypothetical protein LOC100243798-4e-1At5g22890zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2734.00.911616933_atCB345010hypothetical protein LOC100265903-1e-13At1g02920GSTF7O.I.H.G.S.X.
0.2734.00.901611362_atCF516837hypothetical protein LOC100250835-2e-3At4g25150acid phosphatase, putativeO.I.H.G.S.X.
0.2734.00.931612856_atBQ793676hypothetical protein LOC100257583-3e-1At2g07640D2,D4-dienoyl-CoA reductase-relatedO.I.H.G.S.X.
0.2530.50.941619038_atBQ800482hypothetical protein LOC100259975-5e-12At4g26510ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferaseO.I.H.G.S.X.
0.2327.50.931619473_atCF415678--2e-13At1g06515unknown proteinO.I.H.G.S.X.
0.2022.40.891608644_atCF415545hypothetical protein LOC100248267-4e+0At3g57600AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.1718.20.921616579_atCF514965hypothetical protein LOC100260111-6e-2At3g12360ITN1 (INCREASED TOLERANCE TO NACL)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.094.2GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.993.8GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.993.8GSM436428V. riparia (VR, PI588259) SD, 13h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM287877Green hard berry B12 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.390.7GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM287886Green soft berry C22 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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