Co-expression analysis

Gene ID	1612920_at
Gene name
Homology with Arabidopsis	Similar to At5g56060: ATP binding / nucleotide binding / phenylalanine-tRNA ligase (HF=1e+0)
Module size	25 genes
NF	0.36
%ile	52.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	91.0	0.83	1612920_at	CF207623	-	-	1e+0	At5g56060	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.92	1612793_at	CB344029	hypothetical protein LOC100261593	-	3e-5	At3g54826	-	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.92	1614821_at	CF216072	hypothetical protein LOC100254178	-	2e-43	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.94	1612330_at	CF372664	hypothetical protein LOC100242653	-	2e-8	At1g71750	phosphoribosyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.93	1609135_at	CF207623	-	-	1e+0	At5g56060	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.92	1617466_at	CB977275	hypothetical protein LOC100265578	-	2e-6	At1g08630	THA1 (Threonine Aldolase 1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.93	1616327_at	CF211314	hypothetical protein LOC100250497	-	1e+0	At1g15330	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1608970_s_at	CF206450.1	-	-	7e-1	At4g02810	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.92	1615486_at	CF415476	hypothetical protein LOC100245706	-	7e-3	At5g15410	DND1 (DEFENSE NO DEATH 1)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.91	1608361_at	CF517494	hypothetical protein LOC100264929	-	3e-18	At3g26580	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1618259_at	BM436271	hypothetical LOC100245758	-	3e-32	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.91	1616294_s_at	CD802397	hypothetical LOC100256580	-	4e-5	At4g25434	ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.93	1621838_at	CD012562	hypothetical protein LOC100244363	-	2e+0	At5g23530	AtCXE18 (Arabidopsis thaliana carboxyesterase 18)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.91	1621853_at	CA809007	hypothetical protein LOC100262402	-	1e+0	At1g77520	O-methyltransferase family 2 protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.91	1615033_x_at	CF202132.1	-	-	8e-1	At2g14850	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.92	1615832_at	BQ792735	hypothetical protein LOC100242360	-	1e-10	At2g24860	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.93	1615915_at	CF518741	hypothetical protein LOC100267889	-	4e+0	At2g24880	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.92	1611013_at	CF518927	hypothetical protein LOC100243798	-	4e-1	At5g22890	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.91	1616933_at	CB345010	hypothetical protein LOC100265903	-	1e-13	At1g02920	GSTF7	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.90	1611362_at	CF516837	hypothetical protein LOC100250835	-	2e-3	At4g25150	acid phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.93	1612856_at	BQ793676	hypothetical protein LOC100257583	-	3e-1	At2g07640	D2,D4-dienoyl-CoA reductase-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.94	1619038_at	BQ800482	hypothetical protein LOC100259975	-	5e-12	At4g26510	ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.93	1619473_at	CF415678	-	-	2e-13	At1g06515	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.89	1608644_at	CF415545	hypothetical protein LOC100248267	-	4e+0	At3g57600	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.92	1616579_at	CF514965	hypothetical protein LOC100260111	-	6e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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