Co-expression analysis

Gene ID	1612854_at
Gene name	hypothetical protein LOC100256039
Homology with Arabidopsis	Similar to At3g48860: unknown protein (HF=1e-26)
Module size	6 genes
NF	0.51
%ile	75.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.98	1612854_at	CB974875	hypothetical protein LOC100256039	-	1e-26	At3g48860	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.98	1614062_at	CB982394	hypothetical protein LOC100245196	-	5e+0	At5g07630	lipid transporter	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1607998_at	BQ793788	hypothetical protein LOC100245820	-	4e-24	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1617257_at	CB913191	hypothetical protein LOC100263076	-	8e-6	At3g53970	proteasome inhibitor-related	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1615993_at	CD801483	hypothetical protein LOC100263412	-	2e-10	At1g80410	EMB2753 (EMBRYO DEFECTIVE 2753)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.99	1607405_at	CD013596	hypothetical protein LOC100261003	-	2e-6	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.9	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.8	97.8	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
4.1	96.9	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.9	96.6	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.8	96.4	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.7	96.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.5	95.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
3.2	94.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.1	94.6	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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