Co-expression analysis

Gene ID	1612831_s_at
Gene name	H+-pyrophosphatase
Homology with Arabidopsis	Similar to At1g15690: AVP1 (HF=5e-9)
Module size	6 genes
NF	0.69
%ile	94.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.98	1612831_s_at	CF201533.1	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.98	1622167_at	CB007965	hypothetical protein LOC100249144	-	9e-5	At5g23410	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1607488_at	CF373706	hypothetical protein LOC100245682	-	1e+0	At3g06985	LCR44 (Low-molecular-weight cysteine-rich 44)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1612742_s_at	CF372931	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1611783_at	BQ792690	hypothetical protein LOC100262520	-	1e+0	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1606673_at	CB005473	hypothetical protein LOC100253524	-	1e-13	At3g10620	ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
3.0	94.2	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.6	92.5	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.6	92.5	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.5	91.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.5	91.9	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage