Co-expression analysis

Gene ID	1612815_at
Gene name	hypothetical protein LOC100263293
Homology with Arabidopsis	Similar to At5g41910: RNA polymerase II mediator complex protein-related (HF=4e-17)
Module size	6 genes
NF	0.46
%ile	69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.99	1612815_at	CB972191	hypothetical protein LOC100263293	-	4e-17	At5g41910	RNA polymerase II mediator complex protein-related	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.98	1609093_at	CB982450	hypothetical protein LOC100245204	-	3e-5	At1g01170	ozone-responsive stress-related protein, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1615672_at	BQ800515	hypothetical protein LOC100267237	-	2e-7	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1615237_at	CB913715	hypothetical protein LOC100246592	-	3e-18	At2g37110	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.99	1619471_at	BQ794353	hypothetical protein LOC100243217	-	1e-112	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.99	1607294_at	CB347461	hypothetical protein LOC100246786	-	4e-112	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.7	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.4	91.3	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
2.2	89.9	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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