Co-expression analysis

Gene ID	1612790_at
Gene name	hypothetical protein LOC100243027
Homology with Arabidopsis	Similar to At1g61250: SC3 (SECRETORY CARRIER 3) (HF=1e-17)
Module size	6 genes
NF	0.51
%ile	75.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.99	1612790_at	CF608251	hypothetical protein LOC100243027	-	1e-17	At1g61250	SC3 (SECRETORY CARRIER 3)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1613490_at	BQ800479	hypothetical protein LOC100241970	-	7e-22	At4g39220	ATRER1A	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1616331_at	CF212969	hypothetical protein LOC100261989	-	6e-25	At3g08890	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1617385_at	CF513590	hypothetical protein LOC100251722	-	2e-87	At2g27020	PAG1	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.99	1618792_at	CB348194	-	-	1e-37	At1g61250	SC3 (SECRETORY CARRIER 3)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.99	1620109_s_at	BQ796928	hypothetical protein LOC100243583	-	2e+0	At3g57930	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	98.2	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
3.9	96.6	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
3.8	96.4	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
3.3	95.2	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
3.0	94.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.7	93.0	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.6	92.5	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.5	91.9	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.4	91.3	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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