Co-expression analysis

Gene ID 1612784_at
Gene name hypothetical protein LOC100257888
Homology with ArabidopsisSimilar to At4g11490: protein kinase family protein (HF=5e-6)
Module size 10 genes
NF 0.34
%ile 49.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6183.20.911612784_atCB923182hypothetical protein LOC100257888-5e-6At4g11490protein kinase family proteinO.I.H.G.S.X.
0.4464.10.951619688_x_atCF204108.1--9e-1At4g35280zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.4158.70.941607736_atBQ799155--8e-1At3g12480NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)O.I.H.G.S.X.
0.4057.70.941611038_atCF405831hypothetical protein LOC100250261-1e+1At5g37480unknown proteinO.I.H.G.S.X.
0.3751.70.951616436_atCF516544--5e+0At4g13060F-box family protein-relatedO.I.H.G.S.X.
0.2937.70.951619740_atCF214472hypothetical protein LOC100260241-2e-1At2g27535ribosomal protein L10A family proteinO.I.H.G.S.X.
0.2937.70.971619646_atCB341424hypothetical protein LOC100261680-4e+0At5g43960nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2632.00.951617911_atBQ796680hypothetical protein LOC100247972-9e-2At5g53560CB5-E (CYTOCHROME B5 ISOFORM E)O.I.H.G.S.X.
0.2428.70.951609019_atCB973371similar to predicted protein-2e-1At3g61250AtMYB17 (myb domain protein 17)O.I.H.G.S.X.
0.2124.00.951620902_a_atCD801216--6e-1At1g67210proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.591.9GSM147729Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation58Link to GEO
2.591.9GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
2.591.9GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.491.3GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
2.491.3GSM436428V. riparia (VR, PI588259) SD, 13h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM147726Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation55Link to GEO
2.289.9GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
2.289.9GSM147723Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation52Link to GEO
2.189.1GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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