Co-expression analysis

Gene ID	1612781_at
Gene name	hypothetical protein LOC100254037
Homology with Arabidopsis	Similar to At4g37760: SQE3 (squalene epoxidase 3) (HF=2e-2)
Module size	6 genes
NF	0.13
%ile	21.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.88	1612781_at	CB978740	hypothetical protein LOC100254037	-	2e-2	At4g37760	SQE3 (squalene epoxidase 3)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.88	1615654_at	CF211462	hypothetical protein LOC100254037	-	7e-14	At1g58440	XF1	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.89	1608037_at	CD720882	-	-	7e-18	At1g44446	CH1 (CHLORINA 1)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.88	1609383_at	CF511447	hypothetical protein LOC100256715	-	5e+0	At5g04830	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.88	1616202_at	BQ792867	hypothetical protein LOC100262930	-	1e-3	At1g58440	XF1	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.87	1620632_s_at	CB968921	hypothetical protein LOC100249439	-	2e+0	At4g16430	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	98.2	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3
2.7	93.0	GSM436395	V. riparia (VR, PI588259) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.3	90.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147679	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	8

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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