CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1612774_at

Gene name hypothetical protein LOC100261536
Homology with Arabidopsis Similar to At5g40900: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.47

%ile 71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.98 1612774_at CF210198 hypothetical protein LOC100261536 - 2e+0 At5g40900 unknown protein O.I. H.G. S.X.
0.57 79.8 0.98 1610777_at CD797701 hypothetical protein LOC100263956 - 2e-42 At3g13670 protein kinase family protein O.I. H.G. S.X.
0.57 79.8 0.98 1614838_at CB977099 hypothetical protein LOC100244335 - 1e-4 At1g43640 AtTLP5 (TUBBY LIKE PROTEIN 5) O.I. H.G. S.X.
0.44 64.1 0.98 1619392_at CF513478 hypothetical protein LOC100259847 - 4e+0 At3g24060 self-incompatibility protein-related O.I. H.G. S.X.
0.36 50.7 0.98 1620897_at CF603365 similar to F-box-containing protein 2 - 3e-4 At1g06110 SKIP16 (SKP1/ASK-interacting protein 16) O.I. H.G. S.X.
0.23 27.5 0.98 AFFX-Vvi-actin-5_at actin 1 - - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.8	0.98	1612774_at	CF210198	hypothetical protein LOC100261536	-	2e+0	At5g40900	unknown protein	O.I.	H.G.	S.X.
0.57	79.8	0.98	1610777_at	CD797701	hypothetical protein LOC100263956	-	2e-42	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.
0.57	79.8	0.98	1614838_at	CB977099	hypothetical protein LOC100244335	-	1e-4	At1g43640	AtTLP5 (TUBBY LIKE PROTEIN 5)	O.I.	H.G.	S.X.
0.44	64.1	0.98	1619392_at	CF513478	hypothetical protein LOC100259847	-	4e+0	At3g24060	self-incompatibility protein-related	O.I.	H.G.	S.X.
0.36	50.7	0.98	1620897_at	CF603365	similar to F-box-containing protein 2	-	3e-4	At1g06110	SKIP16 (SKP1/ASK-interacting protein 16)	O.I.	H.G.	S.X.
0.23	27.5	0.98	AFFX-Vvi-actin-5_at		actin 1	-			-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	90.8	0.96	1620958_at	CD801330	hypothetical protein LOC100251059	-	1e+0	At5g48660	-	O.I.	H.G.	S.X.
0.67	87.9	0.95	1610087_at	CB836568	hypothetical protein LOC100246114	-	2e-79	At5g42140	zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.
0.56	79.4	0.96	1616274_at	CB971992	hypothetical protein LOC100258912	-	7e-46	At2g47070	SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)	O.I.	H.G.	S.X.
0.55	77.3	0.97	1607595_at	CB919699	similar to serine/threonine protein phosphatase 1; PP1	-	5e-43	At2g39840	TOPP4	O.I.	H.G.	S.X.
0.55	77.3	0.97	1616242_at	CF213196	hypothetical protein LOC100263350	-	2e-1	At4g18500	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.94	1608035_at	CF208115	hypothetical protein LOC100248116	-	3e-1	At3g02100	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.
0.50	72.7	0.96	1610127_at	CB920325	-	-	1e-1	At3g15355	UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)	O.I.	H.G.	S.X.
0.50	72.7	0.96	1613196_at	CB977146	hypothetical protein LOC100256623	-	2e-21	At1g79840	GL2 (GLABRA 2)	O.I.	H.G.	S.X.
0.50	72.7	0.97	1611921_at	CF210910	hypothetical protein LOC100262620	-	8e-11	At4g17570	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.48	68.8	0.95	1621222_at	CF604570	hypothetical protein LOC100250708	-	2e-3	At1g47056	VFB1 (VIER F-BOX PROTEINE 1)	O.I.	H.G.	S.X.
0.44	64.1	0.98	1609918_at	CF414641	hypothetical protein LOC100259885	-	1e-1	At3g55460	SCL30	O.I.	H.G.	S.X.
0.43	61.5	0.98	1620627_at	CF214379	hypothetical protein LOC100259195	-	1e-22	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.
0.42	60.1	0.94	1622355_at	CB348379	hypothetical protein LOC100247074	-	1e-16	At4g00990	transcription factor jumonji (jmjC) domain-containing protein	O.I.	H.G.	S.X.
0.42	60.1	0.97	1616106_at	CB970099	hypothetical protein LOC100257573	-	1e+0	At1g09935	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.
0.42	60.1	0.94	1616986_at	CF512258	hypothetical protein LOC100267539	-	9e-41	At5g51300	splicing factor-related	O.I.	H.G.	S.X.
0.40	57.7	0.98	1614708_at	CF511068	hypothetical protein LOC100248174	-	2e-55	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.
0.38	53.6	0.95	1608012_at	CF209500	hypothetical protein LOC100255371	-	1e-6	At3g51110	crooked neck protein, putative / cell cycle protein, putative	O.I.	H.G.	S.X.
0.38	53.6	0.97	1620772_at	CF607066	hypothetical protein LOC100252015	-	3e-26	At5g53620	unknown protein	O.I.	H.G.	S.X.
0.38	53.6	0.98	1607886_at	CF604620	hypothetical protein LOC100255368	-	1e-9	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	O.I.	H.G.	S.X.
0.36	50.7	0.96	1615964_at	CA810315	hypothetical protein LOC100252228	-	6e+0	At5g67520	adenylylsulfate kinase, putative	O.I.	H.G.	S.X.
0.36	50.7	0.97	1615757_at	CF513784	hypothetical protein LOC100251482	-	7e-8	At3g14172	-	O.I.	H.G.	S.X.
0.36	50.7	0.97	1618594_at	CD720244	hypothetical protein LOC100267905	-	2e-21	At4g33060	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.
0.36	50.7	0.96	1618240_at	CF211533	hypothetical protein LOC100258476	-	3e-13	At1g01650	aspartic-type endopeptidase/ peptidase	O.I.	H.G.	S.X.
0.35	48.5	0.97	1622579_at	CF212817	hypothetical protein LOC100262291	-	3e-11	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.
0.33	45.7	0.95	1619882_at	CF604338	hypothetical protein LOC100265088	-	9e-17	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	O.I.	H.G.	S.X.
0.33	45.7	0.98	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	O.I.	H.G.	S.X.
0.32	43.1	0.92	1607968_at	CF605708	hypothetical protein LOC100257164	-	4e-1	At5g21050	-	O.I.	H.G.	S.X.
0.31	41.3	0.97	1612020_at	CF372179	hypothetical protein LOC100255081	-	6e-9	At4g01000	ubiquitin family protein	O.I.	H.G.	S.X.
0.31	41.3	0.98	1621536_at	CF514198	hypothetical protein LOC100249350	-	3e-10	At1g04230	unknown protein	O.I.	H.G.	S.X.
0.30	39.4	0.95	1610264_at	CB980899	similar to putative multidrug resistance-associated protein	-	5e-34	At1g30410	ATMRP13	O.I.	H.G.	S.X.
0.30	39.4	0.97	1617898_at	CF605263	hypothetical protein LOC100244372	-	3e-1	At5g49610	F-box family protein	O.I.	H.G.	S.X.
0.29	37.7	0.95	1609443_at	CD720324	-	-	4e-30	At5g16880	VHS domain-containing protein / GAT domain-containing protein	O.I.	H.G.	S.X.
0.29	37.7	0.97	1609180_at	CD719738	hypothetical protein LOC100252789	-	3e-32	At5g27620	CYCH	O.I.	H.G.	S.X.
0.29	37.7	0.94	1614366_at	CD009805	hypothetical protein LOC100259831	-	1e-31	At3g55320	PGP20 (P-GLYCOPROTEIN 20)	O.I.	H.G.	S.X.
0.29	37.7	0.95	1607324_at	CD719348	hypothetical protein LOC100244533	-	1e-13	At3g26720	glycosyl hydrolase family 38 protein	O.I.	H.G.	S.X.
0.29	37.7	0.96	1611520_at	CD008875	hypothetical protein LOC100255265	-	3e-1	At2g03020	heat shock protein-related	O.I.	H.G.	S.X.
0.29	37.7	0.96	1612080_at	CA817072	hypothetical protein LOC100263247	-	3e-2	At1g20770	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.96	1617342_at	CF605608	hypothetical protein LOC100250363	-	2e-8	At4g27000	ATRBP45C	O.I.	H.G.	S.X.
0.29	37.7	0.97	1621237_at	CF603521	hypothetical protein LOC100246278	-	3e-10	At5g38640	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.
0.29	37.7	0.97	1615096_at	CD715675	hypothetical protein LOC100262332	-	4e-7	At4g38170	FRS9 (FAR1-related sequence 9)	O.I.	H.G.	S.X.
0.28	37.7	0.92	1613320_at	BQ795571	-	-	4e-25	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	O.I.	H.G.	S.X.
0.28	37.7	0.91	1611628_at	CD719873	-	-	1e-77	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.
0.27	34.0	0.94	1614118_at	CD010339	-	-	3e-17	At2g14910	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.97	1619940_at	CF518701	hypothetical protein LOC100241361 /// hypothetical protein LOC100261422	-	3e-2	At2g32980	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.95	1611551_at	CD713530	-	-	2e-24	At2g17410	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.
0.26	32.0	0.96	1619166_at	CF515677	hypothetical protein LOC100263264	-	3e-13	At4g11860	-	O.I.	H.G.	S.X.
0.26	32.0	0.97	1613733_at	CB345957	hypothetical protein LOC100243231	-	1e-6	At5g59210	myosin heavy chain-related	O.I.	H.G.	S.X.
0.26	32.0	0.98	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	O.I.	H.G.	S.X.
0.26	32.0	0.93	1620123_at	AY150521.1	heterogeneous nuclear ribonucleoprotein-like	-	1e-38	At2g44710	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.25	30.5	0.94	1610256_at	CD711629	-	-	2e-15	At4g26701	DNA binding / DNA topoisomerase type I	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 95.2 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.3	95.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

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Gene ID	1612774_at
Gene name	hypothetical protein LOC100261536
Homology with Arabidopsis	Similar to At5g40900: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.47
%ile	71.0

Co-expression analysis

Gene ID 1612774_at Gene name hypothetical protein LOC100261536 Homology with ArabidopsisSimilar to At5g40900: unknown protein (HF=2e+0) Module size 6 genes NF 0.47 %ile 71.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1612774_at

Gene name hypothetical protein LOC100261536
Homology with Arabidopsis Similar to At5g40900: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.47

%ile 71.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays