CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1612757_at

Gene name hypothetical protein LOC100241266
Homology with Arabidopsis Similar to At2g32560: F-box family protein (HF=1e+0)

Module size 6 genes

NF 0.24

%ile 33.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.6 0.98 1612757_at CD801743 hypothetical protein LOC100241266 - 1e+0 At2g32560 F-box family protein O.I. H.G. S.X.
0.50 72.7 0.98 1607756_s_at CF519234 hypothetical protein LOC100241574 - 3e-40 At3g08510 ATPLC2 (PHOSPHOLIPASE C 2) O.I. H.G. S.X.
0.29 37.7 0.98 1621139_at CB982951 hypothetical protein LOC100262947 - 3e-9 At5g08390 - O.I. H.G. S.X.
0.29 37.7 0.98 1614242_at CF211976 hypothetical protein LOC100243579 - 1e-1 At5g60800 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.15 15.6 0.98 1621252_at CB978314 hypothetical protein LOC100263936 - 2e-8 At3g08620 KH domain-containing protein O.I. H.G. S.X.
0.12 12.1 0.98 1618602_at CD712496 hypothetical protein LOC100267246 - 4e-7 At1g79650 RAD23 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.3 99.8 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
7.4 99.2 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.1 96.9 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.8 96.4 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.2 89.9 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287899 Red soft berry C13 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the maize gene, Zm.18305.1.A1_at, orthologous to the query gene, 1612757_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 Zm.18305.1.A1_at At2g32560 Isocitrate lyase - 1e-9 At3g21720 ICL (ISOCITRATE LYASE) O.I. H.G. S.X.
0.44 55.7 Zm.768.1.A1_at At2g32560 - - 3e+0 At2g27750 nucleolar matrix protein-related O.I. H.G. S.X.
0.36 41.3 Zm.6594.1.A1_at At2g32560 hypothetical protein LOC100193029 - 1e-3 At5g23950 C2 domain-containing protein O.I. H.G. S.X.
0.36 41.3 Zm.3169.2.S1_at At2g32560 hypothetical protein LOC100279753 - 4e-53 At5g44635 minichromosome maintenance family protein / MCM family protein O.I. H.G. S.X.
0.14 7.7 Zm.8395.1.S1_at At2g32560 IDP2362 protein - 1e+0 At1g62690 unknown protein O.I. H.G. S.X.
0.13 6.8 Zm.3169.3.S1_at At2g32560 60S ribosomal protein L33-B - 2e-9 At1g74270 60S ribosomal protein L35a (RPL35aC) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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