Co-expression analysis

Gene ID	1612757_at
Gene name	hypothetical protein LOC100241266
Homology with Arabidopsis	Similar to At2g32560: F-box family protein (HF=1e+0)
Module size	6 genes
NF	0.24
%ile	33.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.98	1612757_at	CD801743	hypothetical protein LOC100241266	-	1e+0	At2g32560	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1607756_s_at	CF519234	hypothetical protein LOC100241574	-	3e-40	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1621139_at	CB982951	hypothetical protein LOC100262947	-	3e-9	At5g08390	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1614242_at	CF211976	hypothetical protein LOC100243579	-	1e-1	At5g60800	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	1621252_at	CB978314	hypothetical protein LOC100263936	-	2e-8	At3g08620	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.98	1618602_at	CD712496	hypothetical protein LOC100267246	-	4e-7	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.3	99.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
7.4	99.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.1	96.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.8	96.4	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.2	89.9	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the barley gene, HS02H08u_at, orthologous to the query gene, 1612757_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HS02H08u_at	At2g32560	-	-	6e+0	At4g18282	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	HU05B08u_at	At2g32560	-	-	3e+0	At1g58007	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig18921_at	At2g32560	-	-	1e+0	At1g49520	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	HVSMEm0022A05r2_at	At2g32560	-	-	5e+0	Atmg00890	-	O.I.	H.G.	S.X.	Please select
0.07	5.8	HM02O11r_at	At2g32560	-	-	4e+0	At3g21730	dihydroneopterin aldolase family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig25667_x_at	At2g32560	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage