Co-expression analysis

Gene ID	1612717_s_at
Gene name	hypothetical protein LOC100259033
Homology with Arabidopsis	Similar to At1g01225: NC domain-containing protein-related (HF=1e+0)
Module size	7 genes
NF	0.41
%ile	60.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	0.98	1612717_s_at	CA814430	hypothetical protein LOC100259033	-	1e+0	At1g01225	NC domain-containing protein-related	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.97	1621992_s_at	BQ793824	hypothetical protein LOC100259183	-	2e-11	At5g66290	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.97	1617552_at	CF202269.1	hypothetical protein LOC100243817	-	4e-35	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.97	1607612_at	CF202447.1	hypothetical protein LOC100262044	-	2e-12	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1615918_at	CD797632	hypothetical protein LOC100247805	-	3e+0	At5g19050	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1616425_at	CF208709	hypothetical protein LOC100260616	-	5e-7	At2g32730	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1615091_at	CD801426	hypothetical protein LOC100242289	-	2e-2	At1g13770	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.9	93.8	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
2.5	91.9	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.2	89.9	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
2.2	89.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage