CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1612710_at

Gene name hypothetical protein LOC100250048
Homology with Arabidopsis Similar to At5g51260: acid phosphatase, putative (HF=9e-2)

Module size 6 genes

NF 0.06

%ile 13.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.3 0.91 1612710_at CF415064 hypothetical protein LOC100250048 - 9e-2 At5g51260 acid phosphatase, putative O.I. H.G. S.X.
0.05 6.0 0.91 1620654_at CF514699 hypothetical protein LOC100262551 - 1e-64 At3g60750 transketolase, putative O.I. H.G. S.X.
0.05 6.0 0.92 1611306_at CB972831 hypothetical protein LOC100245465 - 2e-6 At5g04630 CYP77A9 O.I. H.G. S.X.
0.05 6.0 0.94 1609989_at CF415187 - - 2e+1 At4g08190 Ras-related GTP-binding protein, putative O.I. H.G. S.X.
0.04 5.2 0.92 1616522_at CF403905 hypothetical protein LOC100262892 - 2e-8 At3g14310 ATPME3 O.I. H.G. S.X.
0.04 5.2 0.92 1611638_at CB971322 - - 3e+0 At5g26673 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.31	41.3	0.91	1613054_at	BQ794856	hypothetical protein LOC100257133	-	1e-25	At4g34760	auxin-responsive family protein	O.I.	H.G.	S.X.
0.27	34.0	0.94	1609765_s_at	CB007712	leucoanthocyanidin dioxygenase	-	6e-20	At4g22880	LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE)	O.I.	H.G.	S.X.
0.19	20.9	0.88	1611970_at	CF207195	hypothetical protein LOC100253211	-	1e-1	At5g11910	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.
0.19	20.9	0.92	1616958_s_at	CF371819	hypothetical protein LOC100248073	-	1e-3	Atmg00840	-	O.I.	H.G.	S.X.
0.17	18.2	0.94	1620140_at	CF208989	hypothetical protein LOC100258559	-	1e-10	At1g60390	BURP domain-containing protein / polygalacturonase, putative	O.I.	H.G.	S.X.
0.15	15.6	0.90	1620840_at	CB968965	hypothetical protein LOC100244103	-	2e-5	At3g29030	EXPA5 (EXPANSIN A5)	O.I.	H.G.	S.X.
0.13	13.3	0.89	1611577_at	AF141898.1	-	-	6e-41	At2g45960	PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B)	O.I.	H.G.	S.X.
0.13	13.3	0.92	1612134_at	CF204393.1	similar to anthocyanidin reductase	-	6e-3	At2g02400	cinnamoyl-CoA reductase family	O.I.	H.G.	S.X.
0.12	12.1	0.93	1616850_at	CF208300	hypothetical protein LOC100265220	-	5e-1	At5g37480	unknown protein	O.I.	H.G.	S.X.
0.11	11.3	0.93	1619457_at	CB969731	hypothetical protein LOC100265802	-	7e-12	At1g78580	ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 94.2 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.0 94.2 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
2.7 93.0 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
2.5 91.9 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.3 90.7 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
2.3 90.7 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.2 89.9 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.2 89.9 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
2.2 89.9 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
2.1 89.1 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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