Co-expression analysis

Gene ID	1612710_at
Gene name	hypothetical protein LOC100250048
Homology with Arabidopsis	Similar to At5g51260: acid phosphatase, putative (HF=9e-2)
Module size	6 genes
NF	0.06
%ile	13.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.91	1612710_at	CF415064	hypothetical protein LOC100250048	-	9e-2	At5g51260	acid phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.91	1620654_at	CF514699	hypothetical protein LOC100262551	-	1e-64	At3g60750	transketolase, putative	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.92	1611306_at	CB972831	hypothetical protein LOC100245465	-	2e-6	At5g04630	CYP77A9	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.94	1609989_at	CF415187	-	-	2e+1	At4g08190	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.92	1616522_at	CF403905	hypothetical protein LOC100262892	-	2e-8	At3g14310	ATPME3	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.92	1611638_at	CB971322	-	-	3e+0	At5g26673	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.0	94.2	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.7	93.0	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.5	91.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.3	90.7	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.3	90.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.2	89.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.2	89.9	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.2	89.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.1	89.1	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the maize gene, Zm.13317.1.S1_at, orthologous to the query gene, 1612710_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	Zm.13317.1.S1_at	At5g51260	hypothetical protein LOC100277679	-	2e-1	At3g55790	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.5987.1.A2_a_at	At5g51260	cysteine protease 1 /// cysteine protease 1 /// cysteine proteinase Mir3	-	7e-14	At5g43060	cysteine proteinase, putative / thiol protease, putative	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.17849.1.S1_at	At5g51260	hypothetical protein LOC100192672	-	1e-71	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.3558.1.A1_at	At5g51260	-	-	3e+0	At1g68620	hydrolase	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.10265.1.A1_at	At5g51260	hypothetical protein LOC100279289	-	2e-4	At3g02090	mitochondrial processing peptidase beta subunit, putative	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.12954.1.A1_at	At5g51260	ADP-ribosylation factor	-	1e-26	At2g18390	TTN5 (TITAN 5)	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.9425.1.A1_a_at	At5g51260	hypothetical protein LOC100274829	-	2e+1	At5g23440	FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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