Co-expression analysis

Gene ID 1612626_at
Gene name hypothetical protein LOC100265729
Homology with ArabidopsisSimilar to At2g39390: 60S ribosomal protein L35 (RPL35B) (HF=1e-47)
Module size 6 genes
NF 0.44
%ile 65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981612626_atCF211601hypothetical protein LOC100265729-1e-47At2g3939060S ribosomal protein L35 (RPL35B)O.I.H.G.S.X.
0.6081.90.991613162_atCF514736hypothetical protein LOC100261444-3e-20At4g2623060S ribosomal protein L31 (RPL31B)O.I.H.G.S.X.
0.4057.70.991615150_atCB973162similar to 60S ribosomal protein L34-1e-34At1g69620RPL34 (RIBOSOMAL PROTEIN L34)O.I.H.G.S.X.
0.3853.60.991608096_atCB978907hypothetical protein LOC100264515-6e-59At5g3985040S ribosomal protein S9 (RPS9C)O.I.H.G.S.X.
0.3039.40.991610560_atBQ797613hypothetical protein LOC100258347-7e-52At3g4737040S ribosomal protein S20 (RPS20B)O.I.H.G.S.X.
0.1920.90.991610354_s_atCF511640hypothetical protein LOC100244095-1e-50At3g48930EMB1080 (embryo defective 1080)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6081.90.991621022_atBQ794425hypothetical protein LOC100255295-7e-43At3g0208040S ribosomal protein S19 (RPS19A)O.I.H.G.S.X.
0.4464.10.971610667_s_atCD799449hypothetical protein LOC100241860-4e-9At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.4464.10.981612384_s_atCF215736--4e-1At3g4459060S acidic ribosomal protein P2 (RPP2D)O.I.H.G.S.X.
0.4464.10.981621806_atCF513282hypothetical protein LOC100265511-1e-13At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.4361.50.981621330_atCF372287hypothetical protein LOC100242242-4e-4At5g6751060S ribosomal protein L26 (RPL26B)O.I.H.G.S.X.
0.4361.50.981615745_atCF373865hypothetical protein LOC100247371-2e-11At3g1608060S ribosomal protein L37 (RPL37C)O.I.H.G.S.X.
0.4057.70.981617864_atBQ797843hypothetical protein LOC100262824-4e-64At5g3974060S ribosomal protein L5 (RPL5B)O.I.H.G.S.X.
0.4057.70.991613860_s_atCF512506cyc07-6e-38At3g0484040S ribosomal protein S3A (RPS3aA)O.I.H.G.S.X.
0.3650.70.971609318_atCF516798hypothetical protein LOC100250040-4e-47At1g70600structural constituent of ribosomeO.I.H.G.S.X.
0.3650.70.991610095_s_atCF516594hypothetical protein LOC100257471-9e-49At5g2390060S ribosomal protein L13 (RPL13D)O.I.H.G.S.X.
0.3345.70.971616508_atCF372645hypothetical protein LOC100246705-1e-4At5g62390ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7)O.I.H.G.S.X.
0.3345.70.981608162_atBQ796557hypothetical protein LOC100267451-1e-54At3g0711060S ribosomal protein L13A (RPL13aA)O.I.H.G.S.X.
0.3345.70.981609803_s_atCF202459.1hypothetical protein LOC100255637-3e-3At1g0110060S acidic ribosomal protein P1 (RPP1A)O.I.H.G.S.X.
0.3345.70.991620069_s_atCB969496hypothetical protein LOC100248991-9e-51At3g61110ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)O.I.H.G.S.X.
0.3345.70.991610092_atBQ794603hypothetical protein LOC100250286-2e-18At5g1838040S ribosomal protein S16 (RPS16C)O.I.H.G.S.X.
0.3243.10.981622420_atCF372296hypothetical protein LOC100255637-8e-2At1g0110060S acidic ribosomal protein P1 (RPP1A)O.I.H.G.S.X.
0.3141.30.981611713_s_atCB347325hypothetical protein LOC100265590-4e-10At1g1593040S ribosomal protein S12 (RPS12A)O.I.H.G.S.X.
0.3039.40.971608614_atBQ796491hypothetical protein LOC100245998-1e-3At2g36460fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.3039.40.971621923_atCF414969hypothetical protein LOC100250874-1e-56At1g70600structural constituent of ribosomeO.I.H.G.S.X.
0.2937.70.981608064_atBQ799975hypothetical protein LOC100254541-3e-30At2g4757060S ribosomal protein L18 (RPL18A)O.I.H.G.S.X.
0.2937.70.981607660_atCA812263similar to ribosomal protein L17-6e-80At1g0448060S ribosomal protein L23 (RPL23A)O.I.H.G.S.X.
0.2937.70.991614350_atCF517395hypothetical protein LOC100242146-4e-72At4g00100ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)O.I.H.G.S.X.
0.2734.00.961614607_atBQ799173hypothetical protein LOC100247453-4e-8At1g70782CPuORF28 (Conserved peptide upstream open reading frame 28)O.I.H.G.S.X.
0.2734.00.961620881_atCF568956--3e-4At5g54900ATRBP45A (RNA-binding protein 45A)O.I.H.G.S.X.
0.2734.00.981608113_atCF404331hypothetical protein LOC100242281-1e-38At1g6743060S ribosomal protein L17 (RPL17B)O.I.H.G.S.X.
0.2734.00.981613496_atCB914898hypothetical protein LOC100250070-2e-2At1g74510kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.2734.00.981609713_atCF515520similar to ribosomal protein L10a-4e-51At2g27530PGY1 (PIGGYBACK1)O.I.H.G.S.X.
0.2632.00.981607953_atBQ797508hypothetical protein LOC100252367-4e-13At2g36620RPL24A (ribosomal protein L24)O.I.H.G.S.X.
0.2632.00.981609004_s_atCF214795similar to Enolase 2-5e-64At2g36530LOS2O.I.H.G.S.X.
0.2632.00.971616916_a_atCB346827hypothetical protein LOC100251636-7e-27At5g0245060S ribosomal protein L36 (RPL36C)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.696.0GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287886Green soft berry C22 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM147710Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation39Link to GEO
3.094.2GSM147713Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation42Link to GEO
3.094.2GSM287890Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM287871Green hard berry C4 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM287893Pink soft berry C12 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM287883Green soft berry A23 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM436369Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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