Co-expression analysis

Gene ID 1612626_at
Gene name hypothetical protein LOC100265729
Homology with ArabidopsisSimilar to At2g39390: 60S ribosomal protein L35 (RPL35B) (HF=1e-47)
Module size 6 genes
NF 0.44
%ile 65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981612626_atCF211601hypothetical protein LOC100265729-1e-47At2g3939060S ribosomal protein L35 (RPL35B)O.I.H.G.S.X.
0.6081.90.991613162_atCF514736hypothetical protein LOC100261444-3e-20At4g2623060S ribosomal protein L31 (RPL31B)O.I.H.G.S.X.
0.4057.70.991615150_atCB973162similar to 60S ribosomal protein L34-1e-34At1g69620RPL34 (RIBOSOMAL PROTEIN L34)O.I.H.G.S.X.
0.3853.60.991608096_atCB978907hypothetical protein LOC100264515-6e-59At5g3985040S ribosomal protein S9 (RPS9C)O.I.H.G.S.X.
0.3039.40.991610560_atBQ797613hypothetical protein LOC100258347-7e-52At3g4737040S ribosomal protein S20 (RPS20B)O.I.H.G.S.X.
0.1920.90.991610354_s_atCF511640hypothetical protein LOC100244095-1e-50At3g48930EMB1080 (embryo defective 1080)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.696.0GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287886Green soft berry C22 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM147710Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation39Link to GEO
3.094.2GSM147713Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation42Link to GEO
3.094.2GSM287890Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM287871Green hard berry C4 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM287893Pink soft berry C12 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM287883Green soft berry A23 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM436369Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.90737.1.A1_s_at, orthologous to the query gene, 1612626_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5071.7GmaAffx.90737.1.A1_s_atAt2g39390--3e-34At2g3939060S ribosomal protein L35 (RPL35B)O.I.H.G.S.X.
0.8091.5GmaAffx.91105.1.S1_atAt2g39390--6e-64At2g18020EMB2296 (embryo defective 2296)O.I.H.G.S.X.
0.8091.5GmaAffx.92961.1.S1_atAt2g39390--3e+0At5g16540ZFN3 (ZINC FINGER NUCLEASE 3)O.I.H.G.S.X.
0.6786.1GmaAffx.89935.1.S1_atAt2g39390--3e-60At3g6287060S ribosomal protein L7A (RPL7aB)O.I.H.G.S.X.
0.6786.1GmaAffx.88747.1.S1_atAt2g39390--1e-80At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)O.I.H.G.S.X.
0.6786.1GmaAffx.89314.1.S1_atAt2g39390--2e-35At3g1608060S ribosomal protein L37 (RPL37C)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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