Co-expression analysis

Gene ID 1612617_s_at
Gene name hypothetical protein LOC100257516
Homology with ArabidopsisSimilar to At1g08985: DNA binding (HF=1e+0)
Module size 6 genes
NF 0.33
%ile 46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4666.50.931612617_s_atCB343433hypothetical protein LOC100257516-1e+0At1g08985DNA bindingO.I.H.G.S.X.
0.5072.70.931620502_atCF208333hypothetical protein LOC100256223-1e-14At1g56140leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.5072.70.941620043_atAY427149.1hypothetical protein LOC100248492-1e-3At2g31880leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.2530.50.941618942_atCA817511--2e-6At3g54700carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporterO.I.H.G.S.X.
0.2327.50.921608624_atCF207346hypothetical protein LOC100250126-1e+0At3g28170unknown proteinO.I.H.G.S.X.
0.1718.20.921610909_atCF205434.1--4e+0At2g27960CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.294.9GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM287893Pink soft berry C12 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.390.7GSM287891Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.289.9GSM287894Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM287892Pink soft berry C11 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM287895Pink soft berry B13 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM287881Green soft berry B10 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM287889Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM287896Pink soft berry C27 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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