Co-expression analysis

Gene ID	1612606_at
Gene name	MADS-box protein 3
Homology with Arabidopsis	Similar to At2g03710: SEP4 (SEPALLATA 4) (HF=7e-31)
Module size	31 genes
NF	0.61
%ile	88.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.88	1612606_at	AF373602.1	MADS-box protein 3	-	7e-31	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.	Please select
0.79	92.7	0.94	1614984_at	CF405053	hypothetical protein LOC100250663	-	8e-3	At1g49390	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.78	92.6	0.95	1621723_at	CA817798	hypothetical protein LOC100248744	-	6e-14	At1g61110	anac025 (Arabidopsis NAC domain containing protein 25)	O.I.	H.G.	S.X.	Please select
0.78	92.6	0.95	1609505_at	CB347496	hypothetical protein LOC100259859	-	2e-1	At3g19850	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.95	1607973_at	CB969561	-	-	7e-4	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.74	91.0	0.94	1611085_at	BQ794277	hypothetical protein LOC100241544	-	9e-2	At1g60060	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	89.7	0.92	1621836_at	AF373604.1	MADS-box protein 5	-	2e-9	At4g09960	STK (SEEDSTICK)	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.93	1610413_at	BQ798923	hypothetical protein LOC100240916	-	3e-4	At1g04280	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.96	1615428_at	AF373601.1	MADS-box protein 2	-	2e-40	At5g15800	SEP1 (SEPALLATA1)	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.95	1607719_at	BQ799914	hypothetical protein LOC100253660	-	3e-10	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.95	1615925_at	BQ793198	hypothetical protein LOC100260124	-	3e-4	At4g10020	AtHSD5 (hydroxysteroid dehydrogenase 5)	O.I.	H.G.	S.X.	Please select
0.68	88.0	0.94	1618312_at	CB976210	hypothetical protein LOC100240958	-	8e-2	At1g22540	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.93	1617169_at	CF413676	hypothetical protein LOC100263786	-	2e-8	At1g16390	ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.95	1615645_at	CB969433	hypothetical protein LOC100257930	-	1e+0	At2g42350	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.95	1610616_at	CB921212	hypothetical protein LOC100260773 /// hypothetical protein LOC100252365	-	5e-3	At1g62710	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.94	1622865_at	CB981125	-	-	2e-2	At1g80090	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.95	1614771_at	CB346222	hypothetical protein LOC100242179	-	1e+0	At5g62200	embryo-specific protein-related	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.96	1613748_at	CD797578	AP1-like protein	-	4e-17	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.93	1617980_at	CB346475	-	-	8e-1	At5g66800	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.89	1618627_at	CB978179	hypothetical protein LOC100253668 /// hypothetical LOC100267244	-	1e+0	At4g25890	60S acidic ribosomal protein P3 (RPP3A)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.92	1611173_at	CB979091	hypothetical protein LOC100258969	-	1e+0	At3g25080	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.92	1618959_at	CB977982	hypothetical protein LOC100247141	-	9e-1	At5g20020	RAN2	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.94	1607537_at	CA809222	hypothetical protein LOC100254390	-	2e+0	At4g12530	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.94	1619180_at	CB976469	hypothetical protein LOC100252897	-	2e-14	At1g17810	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.92	1609889_at	CF403259	hypothetical protein LOC100260375	-	1e-1	At3g18640	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1617262_at	CB348038	hypothetical protein LOC100251233	-	4e+0	At2g04395	DNA binding	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.92	1620137_s_at	CB911784	hypothetical protein LOC100260466	-	3e+0	At3g20510	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.96	1617026_at	CD797284	-	-	2e-1	At2g43940	thiol methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.92	1619742_at	AF265562.1	MAD-box transcripion factor	-	2e-16	At3g58780	SHP1 (SHATTERPROOF 1)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.93	1609297_at	CB914618	-	-	1e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.92	1618333_at	CD798042	hypothetical protein LOC100264835	-	4e-3	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	91.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.8	86.0	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
1.7	84.7	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
1.7	84.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.7	84.7	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
1.7	84.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.7	84.7	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
1.7	84.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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