Co-expression analysis

Gene ID	1612576_at
Gene name	hypothetical protein LOC100242562
Homology with Arabidopsis	Similar to At1g47720: OSB1 (Organellar Single-stranded) (HF=4e-2)
Module size	6 genes
NF	0.58
%ile	84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1612576_at	CF209978	hypothetical protein LOC100242562	-	4e-2	At1g47720	OSB1 (Organellar Single-stranded)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1614308_at	CF211114	hypothetical protein LOC100265443	-	2e-37	At5g48470	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1607464_at	CF516938	hypothetical protein LOC100253507	-	3e-30	At5g35220	EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1620046_at	BQ793423	hypothetical protein LOC100245892	-	4e-14	At5g17520	RCP1 (ROOT CAP 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1617670_at	CF211965	hypothetical protein LOC100260576	-	8e-90	At2g21170	TIM (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1612553_at	CF514076	hypothetical protein LOC100255895	-	4e-36	At5g14260	SET domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.2	89.9	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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