Co-expression analysis

Gene ID	1612494_at
Gene name	hypothetical protein LOC100263941
Homology with Arabidopsis	Similar to At5g05990: mitochondrial glycoprotein family protein / MAM33 family protein (HF=3e-3)
Module size	10 genes
NF	0.35
%ile	50.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	0.95	1612494_at	CB969403	hypothetical protein LOC100263941	-	3e-3	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1611180_at	BQ795485	hypothetical protein LOC100263350	-	5e+0	At3g28455	CLE25 (CLAVATA3/ESR-RELATED 25)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1607941_at	BQ797124	hypothetical protein LOC100250830	-	2e+0	At5g28550	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1621546_at	CF204967.1	hypothetical protein LOC100263158	-	6e-6	At4g10710	SPT16 (global transcription factor C)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1617602_at	CF201091.1	-	-	4e-1	At4g15710	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.97	AFFX-BioDn-5_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1608789_at	CF207355	hypothetical protein LOC100258912	-	2e-16	At2g47070	SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1607823_s_at	CF405744	hypothetical protein LOC100263158	-	1e+0	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1607202_s_at	CD797631	hypothetical protein LOC100242295	-	2e-65	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.98	1606481_at	CF403961	hypothetical protein LOC100265434	-	2e-1	At5g30500	galactinol synthase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	91.9	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.0	88.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.9	87.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
1.7	84.7	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM147706	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	35

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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