Co-expression analysis

Gene ID	1612464_at
Gene name	hypothetical protein LOC100257926
Homology with Arabidopsis	Similar to At1g64930: CYP89A7 (HF=2e-9)
Module size	25 genes
NF	0.33
%ile	48.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	89.7	0.86	1612464_at	CF208027	hypothetical protein LOC100257926	-	2e-9	At1g64930	CYP89A7	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.89	1608981_at	CF209511	hypothetical protein LOC100260284	-	2e-4	At2g39410	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.90	1618132_at	CB976959	hypothetical protein LOC100258696	-	5e-15	At1g69850	ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.95	1608583_at	BG273843	hypothetical protein LOC100259296	-	2e-8	At1g23800	ALDH2B7	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.92	1612177_at	CD798227	-	-	3e+0	At3g63210	MARD1	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.94	1610012_s_at	CA814663	-	-	3e-1	At3g29030	EXPA5 (EXPANSIN A5)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.95	1615556_at	CB969107	hypothetical protein LOC100256985	-	5e-17	At2g28680	cupin family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.89	1611613_at	BQ796771	hypothetical protein LOC100256970	-	3e+0	At4g15630	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.94	1612354_at	CF207154	hypothetical protein LOC100259498	-	5e-3	At3g28050	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.91	1612919_at	CB971032	-	-	4e+0	At2g33510	protein binding	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.90	1621448_at	BQ796150	hypothetical protein LOC100251801	-	7e-3	At5g07680	ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.92	1612108_at	BQ800036	hypothetical protein LOC100248099	-	2e-1	At3g16330	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.92	1607846_at	CF208499	-	-	2e-10	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.92	1620855_at	CB346224	similar to putative mitogen-activated protein kinase kinase	-	7e-8	At4g26070	MEK1 (MAP KINASE/ ERK KINASE 1)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.96	1621259_at	BQ792070	hypothetical protein LOC100256240	-	2e-33	At5g04740	ACT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.95	1611198_s_at	CF413741	nhx1 antiporter	-	4e-1	At4g12060	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.96	1609412_at	CF516257	hypothetical protein LOC100251928	-	7e-86	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.96	1607281_at	CB976932	hypothetical protein LOC100247365	-	5e-115	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.95	1612773_at	CF215183	hypothetical protein LOC100264940	-	5e-15	At5g27410	aminotransferase class IV family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.90	1607937_at	BQ793125	-	-	3e+0	At5g28820	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.92	1617551_at	CF607794	hypothetical protein LOC100249114	-	4e-19	At2g24270	ALDH11A3	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1611966_at	CB978373	hypothetical protein LOC100262662	-	3e-12	At4g00110	GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1612267_at	CF211274	similar to NADP-specific isocitrate dehydrogenase	-	9e-65	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.94	1617388_at	CF215211	hypothetical protein LOC100260437	-	3e-30	At3g55530	SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.95	1617082_a_at	CA809479	-	-	1e-20	At3g09770	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
1.8	86.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.7	84.7	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
1.7	84.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.6	83.3	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
1.6	83.3	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.6	83.3	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.6	83.3	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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