Co-expression analysis

Gene ID 1612462_at
Gene name hypothetical protein LOC100252558
Homology with ArabidopsisSimilar to At2g14900: gibberellin-regulated family protein (HF=3e-4)
Module size 13 genes
NF 0.82
%ile 98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6988.30.831612462_atCF605002hypothetical protein LOC100252558-3e-4At2g14900gibberellin-regulated family proteinO.I.H.G.S.X.
0.9299.00.861613802_atCB974339hypothetical protein LOC100245819-4e+0At4g01650-O.I.H.G.S.X.
0.9299.00.851619192_atCF403702hypothetical protein LOC100261238-2e-1At3g57380transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.9299.00.891618535_atCA818656hypothetical protein LOC100252930-4e+0At5g62623-O.I.H.G.S.X.
0.9299.00.901615649_atBQ800288hypothetical protein LOC100257872-4e+0At3g22620protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.8995.50.841609267_atCK138210.1hypothetical protein LOC100243236-4e-16At5g58860CYP86A1 (CYTOCHROME P450 86 A1)O.I.H.G.S.X.
0.8795.20.901616775_atCB976508hypothetical protein LOC100248401-2e-9At1g74460GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.8394.60.861611724_atCB346313hypothetical protein LOC100242039-1e+0At1g48460unknown proteinO.I.H.G.S.X.
0.7992.70.881621885_atCK138210.1--4e-16At5g58860CYP86A1 (CYTOCHROME P450 86 A1)O.I.H.G.S.X.
0.7088.60.901607939_atCF203406.1hypothetical protein LOC100243978-7e-12At4g34050caffeoyl-CoA 3-O-methyltransferase, putativeO.I.H.G.S.X.
0.5879.80.881621511_atCF212324hypothetical protein LOC100263809-2e+0At2g17710unknown proteinO.I.H.G.S.X.
0.5273.90.891612157_atCF213489hypothetical protein LOC100262045-1e-9At5g05390LAC12 (laccase 12)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.289.9GSM299458D_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.189.1GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.088.2GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
2.088.2GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
1.987.2GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
1.886.0GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.886.0GSM147718Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation47Link to GEO
1.886.0GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage