Co-expression analysis

Gene ID	1612462_at
Gene name	hypothetical protein LOC100252558
Homology with Arabidopsis	Similar to At2g14900: gibberellin-regulated family protein (HF=3e-4)
Module size	13 genes
NF	0.82
%ile	98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	88.3	0.83	1612462_at	CF605002	hypothetical protein LOC100252558	-	3e-4	At2g14900	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.92	99.0	0.86	1613802_at	CB974339	hypothetical protein LOC100245819	-	4e+0	At4g01650	-	O.I.	H.G.	S.X.	Please select
0.92	99.0	0.85	1619192_at	CF403702	hypothetical protein LOC100261238	-	2e-1	At3g57380	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.92	99.0	0.89	1618535_at	CA818656	hypothetical protein LOC100252930	-	4e+0	At5g62623	-	O.I.	H.G.	S.X.	Please select
0.92	99.0	0.90	1615649_at	BQ800288	hypothetical protein LOC100257872	-	4e+0	At3g22620	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.89	95.5	0.84	1609267_at	CK138210.1	hypothetical protein LOC100243236	-	4e-16	At5g58860	CYP86A1 (CYTOCHROME P450 86 A1)	O.I.	H.G.	S.X.	Please select
0.88	95.4	0.85	1615801_at	CK138174.1	-	-	4e-1	At1g65060	4CL3	O.I.	H.G.	S.X.	Please select
0.87	95.2	0.90	1616775_at	CB976508	hypothetical protein LOC100248401	-	2e-9	At1g74460	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.86	1611724_at	CB346313	hypothetical protein LOC100242039	-	1e+0	At1g48460	unknown protein	O.I.	H.G.	S.X.	Please select
0.79	92.7	0.88	1621885_at	CK138210.1	-	-	4e-16	At5g58860	CYP86A1 (CYTOCHROME P450 86 A1)	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.90	1607939_at	CF203406.1	hypothetical protein LOC100243978	-	7e-12	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.88	1621511_at	CF212324	hypothetical protein LOC100263809	-	2e+0	At2g17710	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.89	1612157_at	CF213489	hypothetical protein LOC100262045	-	1e-9	At5g05390	LAC12 (laccase 12)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.0	88.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.9	87.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
1.8	86.0	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
1.8	86.0	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage