Co-expression analysis

Gene ID	1612420_at
Gene name	hypothetical protein LOC100252211
Homology with Arabidopsis	Similar to At1g19086: unknown protein (HF=2e+0)
Module size	16 genes
NF	0.29
%ile	40.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1612420_at	CD717999	hypothetical protein LOC100252211	-	2e+0	At1g19086	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1616298_at	CF213113	-	-	1e-18	At3g56900	aladin-related / adracalin-related	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1617002_at	CB971115	-	-	1e+0	At1g06500	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1610167_at	CF403642	hypothetical protein LOC100254398	-	4e-12	At5g14220	HEMG2	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1620612_s_at	CF208882	similar to ADP-ribosylation factor	-	4e-128	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1608170_at	CD798362	hypothetical protein LOC100248761	-	2e-24	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1619095_s_at	CB341757	hypothetical protein LOC100257742	-	8e-8	At5g63280	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1613703_at	BQ800381	hypothetical protein LOC100241006	-	5e-13	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1615765_x_at	CF202835.1	-	-	7e-4	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.98	1615020_at	CF215189	hypothetical protein LOC100255532	-	1e+0	At3g11250	60S acidic ribosomal protein P0 (RPP0C)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1616742_s_at	CF212339	hypothetical protein LOC100250345	-	4e+0	At5g37290	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1610327_at	CB972987	hypothetical protein LOC100259544	-	3e-160	At5g08690	ATP synthase beta chain 2, mitochondrial	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1613457_s_at	CF211789	hypothetical protein LOC100248919	-	6e-21	At3g60620	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	1617631_at	CD798963	hypothetical protein LOC100264042	-	8e-9	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.98	1620355_s_at	CB347046	hypothetical protein LOC100248265	-	8e-26	At5g13490	AAC2 (ADP/ATP carrier 2)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.98	1615530_s_at	CF201449.1	hypothetical protein LOC100256412	-	6e-9	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.8	86.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.8	86.0	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.7	84.7	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.7	84.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
1.6	83.3	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage