CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1612361_at

Gene name
Homology with Arabidopsis Similar to At5g42020: BIP2 (HF=3e-58)

Module size 6 genes

NF 0.55

%ile 81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.96 1612361_at CF202732.1 - - 3e-58 At5g42020 BIP2 O.I. H.G. S.X.
0.55 77.3 0.95 1620925_at CF209359 hypothetical protein LOC100264419 - 2e-1 Atmg01020 - O.I. H.G. S.X.
0.46 66.5 0.97 1608451_at CF205526.1 - - 5e-22 At3g25220 FKBP15-1 O.I. H.G. S.X.
0.46 66.5 0.97 1620380_x_at CF203025.1 - - 1e-1 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.
0.42 60.1 0.96 1609341_s_at CF202467.1 hypothetical protein LOC100265359 - 2e-3 At5g40630 ubiquitin family protein O.I. H.G. S.X.
0.38 53.6 0.96 1609380_x_at CF203033.1 - - 8e-10 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.8	0.96	1612361_at	CF202732.1	-	-	3e-58	At5g42020	BIP2	O.I.	H.G.	S.X.
0.55	77.3	0.95	1620925_at	CF209359	hypothetical protein LOC100264419	-	2e-1	Atmg01020	-	O.I.	H.G.	S.X.
0.46	66.5	0.97	1608451_at	CF205526.1	-	-	5e-22	At3g25220	FKBP15-1	O.I.	H.G.	S.X.
0.46	66.5	0.97	1620380_x_at	CF203025.1	-	-	1e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.
0.42	60.1	0.96	1609341_s_at	CF202467.1	hypothetical protein LOC100265359	-	2e-3	At5g40630	ubiquitin family protein	O.I.	H.G.	S.X.
0.38	53.6	0.96	1609380_x_at	CF203033.1	-	-	8e-10	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	90.8	0.95	1621717_at	CF518880	-	-	4e+0	At5g03495	nucleotide binding	O.I.	H.G.	S.X.
0.67	87.9	0.95	1612859_at	BQ794370	-	-	1e+0	At4g23680	major latex protein-related / MLP-related	O.I.	H.G.	S.X.
0.67	87.9	0.96	1620051_at	CF211598	-	-	3e+0	Atmg00480	-	O.I.	H.G.	S.X.
0.67	87.9	0.96	1607300_at	CF206446.1	-	-	9e-51	At2g47650	UXS4 (UDP-XYLOSE SYNTHASE 4)	O.I.	H.G.	S.X.
0.63	84.3	0.93	1618665_at	CD799476	-	-	7e-1	At5g56070	unknown protein	O.I.	H.G.	S.X.
0.61	83.2	0.96	1615833_s_at	CF202514.1	similar to putative polyubiquitin (UBQ10)	-	5e-1	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.
0.60	81.9	0.93	1613805_x_at	CF206124.1	-	-	1e-1	At1g50060	pathogenesis-related protein, putative	O.I.	H.G.	S.X.
0.59	80.6	0.92	1608402_x_at	CF205658.1	-	-	2e-23	Atmg00030	-	O.I.	H.G.	S.X.
0.59	80.6	0.95	1620107_at	CF518921	-	-	4e+0	At1g74930	ORA47	O.I.	H.G.	S.X.
0.55	77.3	0.92	1620746_at	CF201365.1	-	-	1e+1	At4g17720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.55	77.3	0.94	1608965_x_at	CF202812.1	-	-	3e+0	At4g09740	AtGH9B14 (Arabidopsis thaliana glycosyl hydrolase 9B14)	O.I.	H.G.	S.X.
0.50	72.7	0.95	1610214_at	CF201529.1	-	-	1e+0	At3g27070	TOM20-1 (translocase outer membrane 20-1)	O.I.	H.G.	S.X.
0.50	72.7	0.95	1608915_at	CF200653.1	-	-	3e-8	At5g49540	unknown protein	O.I.	H.G.	S.X.
0.47	67.7	0.95	1621701_at	BQ794940	hypothetical LOC100245420	-	1e+0	At5g38320	unknown protein	O.I.	H.G.	S.X.
0.46	66.5	0.96	1615753_at	CF207576	-	-	2e-11	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.
0.46	66.5	0.92	1608216_at	CF513968	-	-	4e+0	At5g20740	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.44	64.1	0.91	1620371_at	CD003792	-	-	5e+0	At5g22530	unknown protein	O.I.	H.G.	S.X.
0.44	64.1	0.96	1613940_at	CF201923.1	-	-	2e+0	At1g33475	-	O.I.	H.G.	S.X.
0.44	64.1	0.94	1612692_at	CF207590	hypothetical LOC100254134	-	4e+0	At4g24980	-	O.I.	H.G.	S.X.
0.44	64.1	0.96	1618973_s_at	CF204369.1	hypothetical protein LOC100267103	-	1e+0	At3g61560	reticulon family protein (RTNLB6)	O.I.	H.G.	S.X.
0.43	61.5	0.94	1622653_at	CD721431	-	-	2e+0	At5g23470	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.
0.43	61.5	0.97	1621187_s_at	CF201896.1	-	-	8e+0	At5g50345	-	O.I.	H.G.	S.X.
0.40	57.7	0.93	1619828_at	CF371771	hypothetical protein LOC100260718	-	2e-1	At4g21213	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.93	1618810_at	CA814387	hypothetical LOC100255564	-	4e+0	At1g23660	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.94	1609246_s_at	CF206363.1	hypothetical protein LOC100252664	-	6e+0	At5g48657	defense protein-related	O.I.	H.G.	S.X.
0.40	57.7	0.96	1608951_at	CF515796	-	-	9e-1	At5g46090	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.96	1617507_s_at	CF206215.1	-	-	4e+0	Atmg00550	-	O.I.	H.G.	S.X.
0.40	57.7	0.97	1609196_at	BQ792412	hypothetical protein LOC100256073	-	3e-1	At3g14020	NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)	O.I.	H.G.	S.X.
0.40	57.7	0.97	1618907_x_at	CF202612.1	-	-	4e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.
0.38	53.6	0.90	1622768_x_at	CF201098.1	-	-	3e+0	At2g07785	NADH-ubiquinone oxidoreductase, putative	O.I.	H.G.	S.X.
0.36	50.7	0.91	1618556_at	CF203368.1	-	-	3e+0	At1g30040	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	O.I.	H.G.	S.X.
0.36	50.7	0.91	1611189_x_at	CF201446.1	-	-	3e+0	At2g28510	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.36	50.7	0.93	1612171_at	CF207050.1	-	-	1e-25	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	O.I.	H.G.	S.X.
0.36	50.7	0.96	1609173_at	CF373658	-	-	2e+0	At1g27350	-	O.I.	H.G.	S.X.
0.35	48.5	0.95	1609925_at	CF203692.1	-	-	2e-2	At2g30080	ZIP6	O.I.	H.G.	S.X.
0.35	48.5	0.88	1618923_x_at	CF206706.1	-	-	2e+1	At5g57060	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.90	1617867_at	CF205552.1	-	-	2e-43	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.
0.33	45.7	0.92	1622879_at	AY427134.1	hypothetical protein LOC100253039	-	3e-4	At1g62630	disease resistance protein (CC-NBS-LRR class), putative	O.I.	H.G.	S.X.
0.33	45.7	0.94	1621406_at	CF205304.1	-	-	1e-13	At4g36190	serine-type peptidase	O.I.	H.G.	S.X.
0.33	45.7	0.94	1611038_at	CF405831	hypothetical protein LOC100250261	-	1e+1	At5g37480	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.96	1616122_at	CF211952	hypothetical protein LOC100260149	-	2e+0	At5g03780	TRFL10 (TRF-LIKE 10)	O.I.	H.G.	S.X.
0.33	45.7	0.96	1610994_x_at	CF203231.1	-	-	1e+0	At1g48530	-	O.I.	H.G.	S.X.
0.32	43.1	0.89	1622055_x_at	CF205007.1	-	-	5e+0	At3g01140	MYB106 (myb domain protein 106)	O.I.	H.G.	S.X.
0.32	43.1	0.93	1619885_at	CF202348.1	hypothetical protein LOC100249027	-	4e-15	At3g18130	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C)	O.I.	H.G.	S.X.
0.32	43.1	0.90	1607074_at	CF205972.1	-	-	4e-35	At1g52250	-	O.I.	H.G.	S.X.
0.32	43.1	0.95	1614978_at	CB968893	-	-	1e+0	At1g08845	structural constituent of ribosome	O.I.	H.G.	S.X.
0.32	43.1	0.96	1613337_x_at	CF204544.1	-	-	3e-1	At4g28703	-	O.I.	H.G.	S.X.
0.31	41.3	0.91	1611178_at	CF204492.1	-	-	2e+1	At5g17090	-	O.I.	H.G.	S.X.
0.31	41.3	0.92	1615311_at	CF203685.1	-	-	1e+0	At5g02610	60S ribosomal protein L35 (RPL35D)	O.I.	H.G.	S.X.
0.31	41.3	0.92	1614068_at	BQ793418	-	-	1e+0	At4g36820	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.6 96.0 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.0 88.2 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436366 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.6	96.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

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Gene ID	1612361_at
Gene name
Homology with Arabidopsis	Similar to At5g42020: BIP2 (HF=3e-58)
Module size	6 genes
NF	0.55
%ile	81.0

Co-expression analysis

Gene ID 1612361_at Gene name Homology with ArabidopsisSimilar to At5g42020: BIP2 (HF=3e-58) Module size 6 genes NF 0.55 %ile 81.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1612361_at

Gene name
Homology with Arabidopsis Similar to At5g42020: BIP2 (HF=3e-58)

Module size 6 genes

NF 0.55

%ile 81.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays