CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1612361_at

Gene name
Homology with Arabidopsis Similar to At5g42020: BIP2 (HF=3e-58)

Module size 6 genes

NF 0.55

%ile 81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.96 1612361_at CF202732.1 - - 3e-58 At5g42020 BIP2 O.I. H.G. S.X.
0.55 77.3 0.95 1620925_at CF209359 hypothetical protein LOC100264419 - 2e-1 Atmg01020 - O.I. H.G. S.X.
0.46 66.5 0.97 1608451_at CF205526.1 - - 5e-22 At3g25220 FKBP15-1 O.I. H.G. S.X.
0.46 66.5 0.97 1620380_x_at CF203025.1 - - 1e-1 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.
0.42 60.1 0.96 1609341_s_at CF202467.1 hypothetical protein LOC100265359 - 2e-3 At5g40630 ubiquitin family protein O.I. H.G. S.X.
0.38 53.6 0.96 1609380_x_at CF203033.1 - - 8e-10 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.6 96.0 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.0 88.2 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436366 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the maize gene, Zm.280.1.A1_at, orthologous to the query gene, 1612361_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 Zm.280.1.A1_at At5g42020 Binding protein homolog1 - 0 At5g42020 BIP2 O.I. H.G. S.X.
0.56 74.4 Zm.5313.2.A1_at At5g42020 60S ribosomal protein L12 - 9e-9 At2g37190 60S ribosomal protein L12 (RPL12A) O.I. H.G. S.X.
0.55 71.6 Zm.2611.1.A1_a_at At5g42020 hypothetical protein LOC100278318 - 3e-1 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) O.I. H.G. S.X.
0.55 71.6 Zm.12369.1.S1_at At5g42020 - - 2e+1 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) O.I. H.G. S.X.
0.50 65.7 Zm.18385.1.S1_at At5g42020 hypothetical protein LOC100276763 - 1e-1 At3g47810 MAG1 (MAIGO 1) O.I. H.G. S.X.
0.49 61.9 ZmAffx.531.1.A1_at At5g42020 - - 8e-1 At5g20370 serine-rich protein-related O.I. H.G. S.X.
0.43 52.8 ZmAffx.1017.1.A1_at At5g42020 Hypothetical protein LOC100193713 - 3e+0 At3g25030 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.43 52.8 Zm.2823.1.A1_at At5g42020 ankyrin protein kinase-like - 2e+1 At5g40260 nodulin MtN3 family protein O.I. H.G. S.X.
0.43 52.8 Zm.6973.1.A1_at At5g42020 Hypothetical protein LOC100216936 - 5e-1 At4g28830 methyltransferase/ nucleic acid binding O.I. H.G. S.X.
0.42 51.3 Zm.12678.2.S1_at At5g42020 - - 8e-11 At3g05030 NHX2 (SODIUM HYDROGEN EXCHANGER 2) O.I. H.G. S.X.
0.40 48.5 ZmAffx.525.1.A1_at At5g42020 - - 8e-1 At5g23170 protein kinase family protein O.I. H.G. S.X.
0.39 45.6 ZmAffx.732.1.A1_at At5g42020 - - 5e+0 At3g16640 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) O.I. H.G. S.X.
0.35 38.9 Zm.11611.1.A1_at At5g42020 hypothetical protein LOC100192942 - 5e+0 At1g07400 17.8 kDa class I heat shock protein (HSP17.8-CI) O.I. H.G. S.X.
0.26 22.7 Zm.16316.1.A1_at At5g42020 ATP binding protein - 2e-1 At5g19210 DEAD/DEAH box helicase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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