Co-expression analysis

Gene ID	1612361_at
Gene name
Homology with Arabidopsis	Similar to At5g42020: BIP2 (HF=3e-58)
Module size	6 genes
NF	0.55
%ile	81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.96	1612361_at	CF202732.1	-	-	3e-58	At5g42020	BIP2	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1620925_at	CF209359	hypothetical protein LOC100264419	-	2e-1	Atmg01020	-	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1608451_at	CF205526.1	-	-	5e-22	At3g25220	FKBP15-1	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1620380_x_at	CF203025.1	-	-	1e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.96	1609341_s_at	CF202467.1	hypothetical protein LOC100265359	-	2e-3	At5g40630	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.96	1609380_x_at	CF203033.1	-	-	8e-10	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, Ta.21335.2.A1_x_at, orthologous to the query gene, 1612361_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	Ta.21335.2.A1_x_at	At5g42020	-	-	2e-93	At5g42020	BIP2	O.I.	H.G.	S.X.	Please select
0.80	92.2	Ta.1050.1.S1_at	At5g42020	-	-	2e-14	At1g04980	ATPDIL2-2 (PDI-LIKE 2-2)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.8773.2.S1_x_at	At5g42020	-	-	1e+1	At4g26210	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.19530.2.A1_x_at	At5g42020	-	-	3e+0	At2g19730	60S ribosomal protein L28 (RPL28A)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.19530.1.A1_at	At5g42020	-	-	3e-1	At1g55950	-	O.I.	H.G.	S.X.	Please select
0.05	6.7	Ta.2538.2.S1_at	At5g42020	-	-	1e-67	At5g61790	calnexin 1 (CNX1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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