CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1612361_at

Gene name
Homology with Arabidopsis Similar to At5g42020: BIP2 (HF=3e-58)

Module size 6 genes

NF 0.55

%ile 81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.96 1612361_at CF202732.1 - - 3e-58 At5g42020 BIP2 O.I. H.G. S.X.
0.55 77.3 0.95 1620925_at CF209359 hypothetical protein LOC100264419 - 2e-1 Atmg01020 - O.I. H.G. S.X.
0.46 66.5 0.97 1608451_at CF205526.1 - - 5e-22 At3g25220 FKBP15-1 O.I. H.G. S.X.
0.46 66.5 0.97 1620380_x_at CF203025.1 - - 1e-1 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.
0.42 60.1 0.96 1609341_s_at CF202467.1 hypothetical protein LOC100265359 - 2e-3 At5g40630 ubiquitin family protein O.I. H.G. S.X.
0.38 53.6 0.96 1609380_x_at CF203033.1 - - 8e-10 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.6 96.0 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.0 88.2 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436366 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the rice gene, Os02g0115900, orthologous to the query gene, 1612361_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os02g0115900 At5g42020 - Endosperm lumenal binding protein 0 At5g42020 BIP2 O.I. H.G. S.X.
0.46 60.9 Os11g0199200 At5g42020 - Protein disulfide-isomerase precursor (EC 5.3.4.1)(PDI) 8e-20 At1g21750 ATPDIL1-1 (PDI-LIKE 1-1) O.I. H.G. S.X.
0.44 58.1 Os05g0156500 At5g42020 - Apobec-1 binding protein 2 2e-10 At3g62600 ATERDJ3B O.I. H.G. S.X.
0.40 51.1 Os09g0451500 At5g42020 - Thioredoxin-related domain containing protein 1e-18 At1g04980 ATPDIL2-2 (PDI-LIKE 2-2) O.I. H.G. S.X.
0.12 7.2 Os05g0297900 At5g42020 - Signal peptidase 18 subunit (Fragment) 3e-2 At3g15710 signal peptidase, putative O.I. H.G. S.X.
0.06 3.0 Os02g0523500 At5g42020 - 110 kDa 4SNc-Tudor domain protein (Fragment) 3e-11 At5g07350 tudor domain-containing protein / nuclease family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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