Co-expression analysis

Gene ID	1612273_at
Gene name
Homology with Arabidopsis	Similar to At2g34420: LHB1B2 (HF=3e-47)
Module size	10 genes
NF	0.70
%ile	94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	84.7	0.96	1612273_at	BQ799966	-	-	3e-47	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.84	94.8	0.97	1621283_at	AF257777.1	H+-pyrophosphatase	-	1e-93	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.97	1612831_s_at	CF201533.1	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.78	92.6	0.98	1607488_at	CF373706	hypothetical protein LOC100245682	-	1e+0	At3g06985	LCR44 (Low-molecular-weight cysteine-rich 44)	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.98	1622167_at	CB007965	hypothetical protein LOC100249144	-	9e-5	At5g23410	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1611783_at	BQ792690	hypothetical protein LOC100262520	-	1e+0	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.98	1612742_s_at	CF372931	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.97	1606838_at	CB972815	hypothetical protein LOC100268132	-	3e-2	At1g68280	thioesterase-related	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1606673_at	CB005473	hypothetical protein LOC100253524	-	1e-13	At3g10620	ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1612584_s_at	CF211832	similar to putative ankyrin-repeat protein	-	5e-39	At4g35450	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147707	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	36
2.3	90.7	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.2	89.9	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.2	89.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.2	89.9	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.0	88.2	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.0	88.2	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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