Co-expression analysis

Gene ID	1612218_at
Gene name
Homology with Arabidopsis	Similar to Atcg00750: - (HF=5e+0)
Module size	23 genes
NF	0.46
%ile	68.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.90	1612218_at	CF205110.1	-	-	5e+0	Atcg00750	-	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.94	1619482_at	CK138138.1	-	-	5e-3	At2g27385	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.94	1610305_at	CK138223.1	-	-	6e-43	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	O.I.	H.G.	S.X.	Please select
0.62	83.3	0.95	1619011_at	CF208055	hypothetical protein LOC100247295	-	7e-8	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.92	1614207_at	CB976747	hypothetical protein LOC100241610	-	2e-38	At3g47340	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.97	1615898_at	CF404727	hypothetical protein LOC100247526	-	6e-2	At2g22100	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.96	1611748_s_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.94	1621373_s_at	CK138238.1	hypothetical protein LOC100249881	-	1e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1617280_s_at	CF373668	hypothetical protein LOC100258720	-	5e-3	At2g27385	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.92	1614517_x_at	CK138139.1	-	-	4e-4	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.95	1609418_s_at	CF568955	hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538	-	4e+0	At5g35375	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.96	1612089_at	CF212718	-	-	2e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.96	1613074_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1607851_at	CF415102	hypothetical protein LOC100266538	-	9e-2	At1g04660	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.96	1611378_at	CF606069	hypothetical protein LOC100244478	-	2e-8	At1g60630	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.96	1621559_at	CF415172	hypothetical protein LOC100262734	-	3e-51	At3g28860	ABCB19	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.93	1620061_s_at	CF214288	-	-	2e-1	At5g50740	metal ion binding	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.95	1619772_at	CF205273.1	hypothetical protein LOC100260458	-	2e+0	At3g05070	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.94	1621641_at	CD798915	hypothetical protein LOC100256711	-	6e-2	At2g32020	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1611732_at	CF215219	hypothetical protein LOC100257805	-	3e-2	At4g37750	ANT (AINTEGUMENTA)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.93	1620034_at	CF568846	-	-	4e+0	At5g08410	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.95	1614053_at	CF516548	hypothetical protein LOC100252212	-	5e-1	At1g58007	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1608586_at	CF514688	hypothetical protein LOC100241814	-	4e-18	At4g21960	PRXR1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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