Co-expression analysis

Gene ID	1612100_at
Gene name	hypothetical protein LOC100248200
Homology with Arabidopsis	Similar to At5g03840: TFL1 (TERMINAL FLOWER 1) (HF=4e+0)
Module size	15 genes
NF	0.52
%ile	77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	88.3	0.94	1612100_at	CF215638	hypothetical protein LOC100248200	-	4e+0	At5g03840	TFL1 (TERMINAL FLOWER 1)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.95	1609396_at	CF210676	hypothetical protein LOC100249947	-	3e-10	At2g32180	PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18)	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.96	1612576_at	CF209978	hypothetical protein LOC100242562	-	4e-2	At1g47720	OSB1 (Organellar Single-stranded)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.93	1621293_at	CB972049	hypothetical protein LOC100265613	-	8e-22	At4g26370	antitermination NusB domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1612553_at	CF514076	hypothetical protein LOC100255895	-	4e-36	At5g14260	SET domain-containing protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.96	1614308_at	CF211114	hypothetical protein LOC100265443	-	2e-37	At5g48470	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.95	1607464_at	CF516938	hypothetical protein LOC100253507	-	3e-30	At5g35220	EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.95	1609122_at	CB003768	hypothetical protein LOC100267142	-	7e-27	At2g04530	CPZ	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.96	1613696_at	CA817501	hypothetical protein LOC100242891	-	1e+0	At2g25720	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.95	1611466_at	CF372402	hypothetical protein LOC100253536	-	7e-26	At4g19100	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1611866_at	CF513347	hypothetical protein LOC100246501	-	6e-12	At3g53460	CP29	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1618846_at	CD011927	hypothetical protein LOC100258439	-	2e-15	At3g45050	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1617670_at	CF211965	hypothetical protein LOC100260576	-	8e-90	At2g21170	TIM (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.96	1621525_at	CB342932	-	-	2e-12	At1g67660	DNA binding / nuclease	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.96	1620303_at	CB981867	hypothetical protein LOC100242724	-	4e-6	At3g18420	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
1.8	86.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage