Co-expression analysis

Gene ID	1612089_at
Gene name
Homology with Arabidopsis	Similar to At5g12235: CLE22 (CLAVATA3/ESR-RELATED 22) (HF=2e+0)
Module size	15 genes
NF	0.67
%ile	92.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.96	1612089_at	CF212718	-	-	2e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.96	1613573_at	CF609267	hypothetical protein LOC100260045	-	6e-33	At1g53860	remorin family protein	O.I.	H.G.	S.X.	Please select
0.79	92.7	0.96	1611748_s_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.74	91.0	0.96	1607851_at	CF415102	hypothetical protein LOC100266538	-	9e-2	At1g04660	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.96	1609418_s_at	CF568955	hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538	-	4e+0	At5g35375	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.96	1613074_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.97	1615898_at	CF404727	hypothetical protein LOC100247526	-	6e-2	At2g22100	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.96	1619011_at	CF208055	hypothetical protein LOC100247295	-	7e-8	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.95	1617280_s_at	CF373668	hypothetical protein LOC100258720	-	5e-3	At2g27385	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.95	1609703_at	CF213302	similar to homeodomain protein ARBORKNOX1	-	2e-43	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.96	1621559_at	CF415172	hypothetical protein LOC100262734	-	3e-51	At3g28860	ABCB19	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.96	1622481_x_at	CF568921	-	-	3e-2	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.95	1619772_at	CF205273.1	hypothetical protein LOC100260458	-	2e+0	At3g05070	-	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1619231_at	CF372469	hypothetical protein LOC100248953	-	2e+0	At3g60440	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1611378_at	CF606069	hypothetical protein LOC100244478	-	2e-8	At1g60630	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.1	89.1	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.0	88.2	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.9	87.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
1.9	87.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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