Co-expression analysis

Gene ID	1612050_at
Gene name
Homology with Arabidopsis	Similar to At5g24090: acidic endochitinase (CHIB1) (HF=8e-5)
Module size	24 genes
NF	0.63
%ile	89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.8	0.88	1612050_at	CF208838	-	-	8e-5	At5g24090	acidic endochitinase (CHIB1)	O.I.	H.G.	S.X.	Please select
0.82	93.9	0.91	1614815_s_at	CF603973	hypothetical protein LOC100247918	-	1e+0	At4g24700	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	93.7	0.92	1611552_at	CB980533	hypothetical protein LOC100246456	-	4e-3	At5g24090	acidic endochitinase (CHIB1)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.90	1613811_a_at	CB920849	VVTL1	-	5e-13	At1g07720	KCS3 (3-KETOACYL-COA SYNTHASE 3)	O.I.	H.G.	S.X.	Please select
0.76	91.5	0.91	1616413_at	AF003007.1	VVTL1	-	4e-5	At4g11650	ATOSM34 (osmotin 34)	O.I.	H.G.	S.X.	Please select
0.76	91.5	0.90	1611710_at	AF532966.1	class IV chitinase /// class IV endochitinase	-	2e+0	At2g43590	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.75	91.3	0.91	1615798_at	AB073013.1	-	-	1e-5	At1g66370	MYB113 (myb domain protein 113)	O.I.	H.G.	S.X.	Please select
0.75	91.3	0.91	1610071_at	BQ797708	hypothetical protein LOC100253046	-	2e-4	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	O.I.	H.G.	S.X.	Please select
0.74	91.0	0.91	1611457_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.91	1609366_at	CD012590	-	-	1e+0	At5g26170	WRKY50	O.I.	H.G.	S.X.	Please select
0.72	89.7	0.90	1606998_at	CF208295	hypothetical protein LOC100243265	-	4e+0	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	89.7	0.89	1611426_at	CF405451	-	-	4e+0	At3g45320	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.90	1608122_at	CB982493	hypothetical protein LOC100241637	-	4e-1	At4g36100	-	O.I.	H.G.	S.X.	Please select
0.68	88.0	0.93	1612883_at	CF213322	hypothetical protein LOC100241955	-	2e-95	At5g20280	ATSPS1F (sucrose phosphate synthase 1F)	O.I.	H.G.	S.X.	Please select
0.66	85.1	0.93	1621352_at	BQ794457	hypothetical protein LOC100250600	-	3e-1	At1g74930	ORA47	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.92	1615776_at	BQ794648	ripening-related protein-like	-	2e-3	At1g15840	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	83.3	0.93	1609861_at	BQ792428	hypothetical protein LOC100246739	-	6e+0	At5g02640	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.94	1615374_at	CB911656	hypothetical protein LOC100241955	-	8e-1	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.92	1616617_at	AF195654.1	SCUTL2	-	3e-5	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.93	1608916_at	CB007786	hypothetical protein LOC100260173	-	2e-2	At1g73390	-	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.91	1616104_at	CB004955	hypothetical protein LOC100252339	-	7e-3	At2g16580	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.91	1606931_at	CD797978	hypothetical protein LOC100266572	-	3e-4	At1g56230	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.91	1616279_at	BQ796307	hypothetical protein LOC100260173	-	1e-1	At1g70440	SRO3 (SIMILAR TO RCD ONE 3)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.92	1620050_at	CB009432	hypothetical protein LOC100244027	-	1e-5	At5g17500	glycosyl hydrolase family 5 protein / cellulase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	98.4	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
3.3	95.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.7	84.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
1.7	84.7	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.7	84.7	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.6	83.3	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage