Co-expression analysis

Gene ID 1612049_at
Gene name
Homology with ArabidopsisSimilar to At1g70610: ATTAP1 (HF=2e-21)
Module size 8 genes
NF 0.19
%ile 27.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9399.20.921612049_atCD007708--2e-21At1g70610ATTAP1O.I.H.G.S.X.
0.3141.30.951618102_atCF415084--7e-37At2g18710SCY1 (SecY Homolog 1)O.I.H.G.S.X.
0.2937.70.961621037_atCB980438--5e+0At5g18690AGP25 (ARABINOGALACTAN PROTEINS 25)O.I.H.G.S.X.
0.2530.50.961613343_atCB921793hypothetical protein LOC100244627-5e-3At1g62240unknown proteinO.I.H.G.S.X.
0.1920.90.961611018_atCD003886--1e-78At3g59870unknown proteinO.I.H.G.S.X.
0.1212.10.961621050_atCD799000hypothetical protein LOC100263528-6e-3At3g01910SOX (SULFITE OXIDASE)O.I.H.G.S.X.
0.1111.30.961614634_atCF214982hypothetical protein LOC100249595-1e-43At1g65260PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)O.I.H.G.S.X.
0.099.40.951608879_s_atCF204246.1hypothetical protein LOC100265837-2e-1At2g20920unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.796.2GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
2.692.5GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
2.390.7GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.390.7GSM147729Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation58Link to GEO
2.289.9GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
2.289.9GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.289.9GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.289.9GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.289.9GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM287881Green soft berry B10 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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