Co-expression analysis

Gene ID	1612029_at
Gene name
Homology with Arabidopsis	Similar to At4g39940: AKN2 (APS-kinase 2) (HF=4e+0)
Module size	13 genes
NF	0.42
%ile	62.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	79.8	0.94	1612029_at	CF511236	-	-	4e+0	At4g39940	AKN2 (APS-kinase 2)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1610742_at	CB008464	similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	-	1e-20	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.96	1608878_s_at	CB923323	hypothetical protein LOC100244761	-	2e-3	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.95	1612181_at	CF518786	hypothetical protein LOC100241990	-	7e-6	At4g14100	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.96	1621516_at	CB923323	hypothetical protein LOC100244761	-	2e-3	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.96	1612267_at	CF211274	similar to NADP-specific isocitrate dehydrogenase	-	9e-65	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1606836_at	CA809479	hypothetical protein LOC100260106	-	1e-20	At3g09770	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.96	1608442_at	AF177590.1	ornithine aminotransferase	-	8e-60	At5g46180	delta-OAT	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.94	1614416_at	CD013543	hypothetical protein LOC100244960	-	8e-6	At5g58900	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1608031_at	BQ792714	hypothetical protein LOC100253247	-	4e-20	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.97	1621221_at	CF403377	hypothetical protein LOC100252472	-	7e-28	At5g11900	eukaryotic translation initiation factor SUI1 family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.96	1611145_at	CF513038	hypothetical protein LOC100263525	-	4e-9	At3g44190	pyridine nucleotide-disulphide oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.95	1615851_at	CD713329	hypothetical protein LOC100261174	-	6e-12	At5g16290	acetolactate synthase small subunit, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	98.0	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.9	87.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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